PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g35190.3.p
Common NameBRADI_1g35190, LOC104581510
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 793aa    MW: 88324.5 Da    PI: 4.8402
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g35190.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.1e-07639681145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       r +W++ + +l++++ +q+G++ ++ I + ++  +t+ q++ ++ 
  Bradi1g35190.3.p 639 RAKWSKTDTDLFYQGLQQFGSD-FAMIQQLFP-DKTRDQVRQKFK 681
                       569*******************.*********.*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159633.4E-25632712No hitNo description
Gene3DG3DSA:1.10.10.603.2E-4637685IPR009057Homeodomain-like
PROSITE profilePS512939.521637688IPR017884SANT domain
SMARTSM007171.4E-7638686IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-9641688IPR009057Homeodomain-like
CDDcd001673.65E-5641682No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MIDDEADLAN IADALEEDVQ AAAKFRPKPR AKSRKPSMAS RSQLPNPRVE KPDEKVEASN  60
QDNLSQEITP STLPASEITG AAAAASEGGF GTLSDDVSTV SAVGRVSPSE DRSHDLSEVH  120
THQGNLVVSD SQASSSHLGG KTIDDLADFE GLCDSNAEQE RVAKFKPKNQ LKLSKAASKS  180
RKVDQKAVAS TIDVASQSKD TNQARTDQEP VHTSDSQTSL GTSNSVVDNL ADQESILEEP  240
VQEETVAKIV SESRDVVSQD ARIDSPDEVL TSDIHPKPRD QEAIAVPDSW PPQDDTNIDL  300
DSQEELINHH IDDTQQIVEE PSAEATAKFQ PNVKRKKGKG KSVTFILPNA SDGVAPADTS  360
SEWSNINHYC NDLGADESLN NLLEQTAQKH SLAERQHSND QECTNRESQY HEGGPSDHAV  420
EKQPDLSMNL RSRKKVLKVG MSEHTTDNNF DEDYVEPLAA EQDNDSGEEY IAGGKLKVRR  480
KSRAKDTNKE PLRGSKRTSK DSTVEESQQQ KLQKEKGEVT PRGRKRASKD TLAEQPAKKL  540
AHRIRQKRTK EFRTLLEKPD HEIDRMKLSV THLRLLQEAR ERIKSKTIPS GPSYSNQSSQ  600
FGDTDDFDPF GEYDNGRTEN HMFENTKLNY HSYMNKQTRA KWSKTDTDLF YQGLQQFGSD  660
FAMIQQLFPD KTRDQVRQKF KTEEKKHPMQ VHDAILHRSR DNSYLKQVIK NLNIEDLPIG  720
INKSTHKQED TSNEVNPGNE NMLDDIIDGE EENDPNWSDK GQGTQVGSEV EEAGEPVSSA  780
KADPDLDVFD WY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g35190.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227475.10.0uncharacterized protein LOC104581510 isoform X3
TrEMBLI1GX130.0I1GX13_BRADI; Uncharacterized protein
STRINGBRADI1G35190.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.14e-35MYB_related family protein