PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g35190.2.p
Common NameBRADI_1g35190, LOC104581510
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 868aa    MW: 96071.2 Da    PI: 5.0322
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g35190.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.5e-07714756145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       r +W++ + +l++++ +q+G++ ++ I + ++  +t+ q++ ++ 
  Bradi1g35190.2.p 714 RAKWSKTDTDLFYQGLQQFGSD-FAMIQQLFP-DKTRDQVRQKFK 756
                       569*******************.*********.*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159633.8E-25707787No hitNo description
PROSITE profilePS512939.521712763IPR017884SANT domain
Gene3DG3DSA:1.10.10.603.6E-4712760IPR009057Homeodomain-like
SMARTSM007171.4E-7713761IPR001005SANT/Myb domain
CDDcd001673.41E-5716757No hitNo description
SuperFamilySSF466891.27E-9716763IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MIDDEADLAN IADALEEDVQ AAAKFRPKPR AKSRKPSMAS RSQLPNPRVE KPDEKVEASN  60
QDNLSQEITP STLPASEITG AAAAASEGGF GTLSDDVSTV SAVGRVSPSE DRSHDLSEVH  120
THQGNLVVSD SQASSSHLGG KTIDDLADFE GLCDSNAEQE RVAKFKPKNQ LKLSKAASKS  180
RKVDQKAVAS TIDVASQSKD TNQARTDQEP VHTSDSQTSL GTSNSVVDNL ADQESILEEP  240
VQEETVAKIV SESRDVVSQD ARIDSPDEVL TSDIHPKPRD QEAIAVPDSW PPQDDTNIDL  300
DSQEELINHH IDDTQQIVEE PSARSPAPPI MPRPLPRHTA AGCAIGSPDP AQLAPAAGLP  360
QADPPATELA DRHHHEASSS RFPPTTSSSS SRPPRFLAEA TAKFQPNVKR KKGKGKSVTF  420
ILPNASDGVA PADTSSEWSN INHYCNDLGA DESLNNLLEQ TAQKHSLAER QHSNDQECTN  480
RESQYHEGGP SDHAVEKQPD LSMNLRSRKK VLKVGMSEHT TDNNFDEDYV EPLAAEQDND  540
SGEEYIAGGK LKVRRKSRAK DTNKEPLRGS KRTSKDSTVE ESQQQKLQKE KGEVTPRGRK  600
RASKDTLAEQ PAKKLAHRIR QKRTKEFRTL LEKPDHEIDR MKLSVTHLRL LQEARERIKS  660
KTIPSGPSYS NQSSQFGDTD DFDPFGEYDN GRTENHMFEN TKLNYHSYMN KQTRAKWSKT  720
DTDLFYQGLQ QFGSDFAMIQ QLFPDKTRDQ VRQKFKTEEK KHPMQVHDAI LHRSRDNSYL  780
KQVIKNLNIE DLPIGINKST HKQEDTSNEV NPGNENMLDD IIDGEEENDP NWSDKGQGTQ  840
VGSEVEEAGE PVSSAKADPD LDVFDWY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g35190.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227473.10.0uncharacterized protein LOC104581510 isoform X1
TrEMBLA0A0Q3NJF70.0A0A0Q3NJF7_BRADI; Uncharacterized protein
STRINGBRADI1G35190.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Representative plantOGRP1010535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.14e-35MYB_related family protein