PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g35000.1.p | ||||||||
Common Name | BRADI_1g35000, LOC100835899 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 231aa MW: 26034.6 Da PI: 9.2341 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.3 | 4.6e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+skRr+gi+KKA+EL vLCda+va+i+fsstgk +e++s Bradi1g35000.1.p 9 KRIENATNRQVTYSKRRTGIMKKAKELTVLCDAQVAIIMFSSTGKYHEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 89.4 | 6.5e-30 | 71 | 168 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 yq++ g+sl+ +++e++q+ l+ Lk+ ++nL++e+R+++GedL+sL+++eL+ Leq+++ +lk++R++K++++++q+e+ +kk k qe+ k+ Bradi1g35000.1.p 71 YQQALGTSLWIEQYENMQRTLNHLKDINRNLRTEIRQRMGEDLDSLEFEELRGLEQNVDAALKEVRQRKYHVITTQTETYKKKVKHSQEAYKN 163 78899999************************************************************************************* PP K-box 94 Lrkkl 98 L+++l Bradi1g35000.1.p 164 LQQEL 168 **987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.604 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.1E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.11E-37 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.58E-42 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 2.5E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.7E-22 | 82 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.712 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MGRGKIEIKR IENATNRQVT YSKRRTGIMK KAKELTVLCD AQVAIIMFSS TGKYHEFCSP 60 GIDIKGIFDR YQQALGTSLW IEQYENMQRT LNHLKDINRN LRTEIRQRMG EDLDSLEFEE 120 LRGLEQNVDA ALKEVRQRKY HVITTQTETY KKKVKHSQEA YKNLQQELGM REDPAFGFVD 180 NPAAGGWDGV AAVAMGGAGA ADSMYSFRVV PSQPNLHGMA YGGSHDLRLG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-17 | 1 | 63 | 1 | 63 | MEF2C |
5f28_B | 2e-17 | 1 | 63 | 1 | 63 | MEF2C |
5f28_C | 2e-17 | 1 | 63 | 1 | 63 | MEF2C |
5f28_D | 2e-17 | 1 | 63 | 1 | 63 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS4. {ECO:0000269|PubMed:12506001, ECO:0000269|PubMed:12905025, ECO:0000269|PubMed:14558657}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g35000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469301 | 0.0 | KF469301.1 Brachypodium distachyon MADS-box transcription factor 5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001289800.1 | 1e-174 | MADS-box transcription factor 16 | ||||
Swissprot | Q944S9 | 1e-142 | MAD16_ORYSJ; MADS-box transcription factor 16 | ||||
TrEMBL | I1GWZ3 | 1e-173 | I1GWZ3_BRADI; MADS-box transcription factor 5 | ||||
STRING | BRADI1G35000.1 | 1e-173 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5728 | 35 | 52 | Representative plant | OGRP5199 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 9e-66 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g35000.1.p |
Entrez Gene | 100835899 |