PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g34470.5.p

Common Name

BRADI_1g34470, LOC100823547

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 474aa MW: 51652.4 Da PI: 6.2671

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g34470.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.6	4.2e-31	266	320	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWt eLHe+Fveav++L G+ekAtPk +l+lmkv+gLt++hvkSHLQkYR Bradi1g34470.5.p 266 KSRLRWTLELHESFVEAVNKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRH 320 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.3E-16	263	320	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.799	263	323	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-29	264	321	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-23	266	320	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	268	319	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-21	358	403	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MSSQAVVAVK PTTAPDKTVH SYACGSTQSS VHKLPDAKLD HLRFLDDNLS STSQSSNIKT 60 ELIRSSSLPF RLQKRSPLSD PESPLSHVSQ PNFSDPMASN SSTFCTSLFS SSSTNSAPCQ 120 QKGALPFLPP PPKCEQQVIP GQSCSSSLHL TGDIGNAYDE AEHSDDMKDF LNLSGDASDA 180 SYHGEDNAMA FTEQMEFQFL SEQLGIAITD NEESPRLDDI YDTPPPQLSS LPVSSCSNQS 240 LHNLGSPVKL PLCSARSSSG STTTNKSRLR WTLELHESFV EAVNKLEGPE KATPKGVLKL 300 MKVEGLTIYH VKSHLQKYRH ARYLPDMKED KKASLDCKKV QSAQSGSNGS YLDKNKNLAE 360 ALRMQMEVQK QLHEQLEVQR QLQLRIEEHA KYLHRILEEQ QKASNGGSSS LKISTEPTES 420 TSINGTAPEE ATTSSPHPSK NIAAPEAGTE CDSPVRNKRA KVHGDLESES PCS*

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MSSQAVVAVK PTTAPDKTVH SYACGSTQSS VHKLPDAKLD HLRFLDDNLS STSQSSNIKT  60
ELIRSSSLPF RLQKRSPLSD PESPLSHVSQ PNFSDPMASN SSTFCTSLFS SSSTNSAPCQ  120
QKGALPFLPP PPKCEQQVIP GQSCSSSLHL TGDIGNAYDE AEHSDDMKDF LNLSGDASDA  180
SYHGEDNAMA FTEQMEFQFL SEQLGIAITD NEESPRLDDI YDTPPPQLSS LPVSSCSNQS  240
LHNLGSPVKL PLCSARSSSG STTTNKSRLR WTLELHESFV EAVNKLEGPE KATPKGVLKL  300
MKVEGLTIYH VKSHLQKYRH ARYLPDMKED KKASLDCKKV QSAQSGSNGS YLDKNKNLAE  360
ALRMQMEVQK QLHEQLEVQR QLQLRIEEHA KYLHRILEEQ QKASNGGSSS LKISTEPTES  420
TSINGTAPEE ATTSSPHPSK NIAAPEAGTE CDSPVRNKRA KVHGDLESES PCS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-27	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-27	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-27	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-27	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-27	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-27	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-27	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-27	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g34470.5.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003563523.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Refseq	XP_024313685.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Swissprot	Q6YXZ4	1e-154	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	I1GWS3	0.0	I1GWS3_BRADI; Uncharacterized protein
STRING	BRADI1G34470.4	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-71	G2-like family protein

Link Out ? help Back to Top
Phytozome	Bradi1g34470.5.p
Entrez Gene	100823547

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]