PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g34470.1.p | ||||||||
Common Name | BRADI_1g34470, LOC100823547 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 474aa MW: 51652.4 Da PI: 6.2671 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.6 | 4.2e-31 | 266 | 320 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWt eLHe+Fveav++L G+ekAtPk +l+lmkv+gLt++hvkSHLQkYR Bradi1g34470.1.p 266 KSRLRWTLELHESFVEAVNKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRH 320 68****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.3E-16 | 263 | 320 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.799 | 263 | 323 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-29 | 264 | 321 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-23 | 266 | 320 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 268 | 319 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.6E-21 | 358 | 403 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MSSQAVVAVK PTTAPDKTVH SYACGSTQSS VHKLPDAKLD HLRFLDDNLS STSQSSNIKT 60 ELIRSSSLPF RLQKRSPLSD PESPLSHVSQ PNFSDPMASN SSTFCTSLFS SSSTNSAPCQ 120 QKGALPFLPP PPKCEQQVIP GQSCSSSLHL TGDIGNAYDE AEHSDDMKDF LNLSGDASDA 180 SYHGEDNAMA FTEQMEFQFL SEQLGIAITD NEESPRLDDI YDTPPPQLSS LPVSSCSNQS 240 LHNLGSPVKL PLCSARSSSG STTTNKSRLR WTLELHESFV EAVNKLEGPE KATPKGVLKL 300 MKVEGLTIYH VKSHLQKYRH ARYLPDMKED KKASLDCKKV QSAQSGSNGS YLDKNKNLAE 360 ALRMQMEVQK QLHEQLEVQR QLQLRIEEHA KYLHRILEEQ QKASNGGSSS LKISTEPTES 420 TSINGTAPEE ATTSSPHPSK NIAAPEAGTE CDSPVRNKRA KVHGDLESES PCS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-27 | 266 | 323 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-27 | 266 | 323 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-27 | 266 | 323 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-27 | 266 | 323 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-27 | 266 | 323 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-27 | 266 | 323 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-27 | 266 | 323 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-27 | 266 | 323 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g34470.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563523.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 3 | ||||
Refseq | XP_024313685.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 3 | ||||
Swissprot | Q6YXZ4 | 1e-154 | PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3 | ||||
TrEMBL | I1GWS3 | 0.0 | I1GWS3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G34470.4 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4526 | 37 | 69 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 1e-71 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g34470.1.p |
Entrez Gene | 100823547 |
Publications ? help Back to Top | |||
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