PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g33980.2.p | ||||||||
Common Name | BRADI_1g33980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GATA | ||||||||
Protein Properties | Length: 360aa MW: 39011.3 Da PI: 4.6552 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.6 | 2.7e-16 | 264 | 300 | 1 | 35 |
GATA 1 CsnCg..ttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg +++Tp++Rrgpdg++tLCnaCGl+++ kg+ Bradi1g33980.2.p 264 CHHCGinAKNTPMMRRGPDGPRTLCNACGLMWANKGM 300 ****833566***********************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 15.234 | 128 | 163 | IPR010399 | Tify domain |
SMART | SM00979 | 6.2E-11 | 128 | 163 | IPR010399 | Tify domain |
Pfam | PF06200 | 4.1E-13 | 130 | 162 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.2E-15 | 189 | 231 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.334 | 189 | 231 | IPR010402 | CCT domain |
SMART | SM00401 | 3.0E-13 | 258 | 311 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.117 | 258 | 315 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.18E-12 | 262 | 321 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.6E-15 | 263 | 304 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.29E-14 | 263 | 306 | No hit | No description |
Pfam | PF00320 | 7.8E-14 | 264 | 299 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 264 | 291 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MAQHDGKPYQ PRRGPERPPS APQPADDAAL GASAVDHLAA AAAEAEAMNR FDEEHEQQEM 60 EEEDEEEEEV EEEEMEEDDD DEAEGDGQLD GGGNGESVPM DAAAAAAAAA AAGVPLDPHG 120 AMVAANAANA STNQLTLSFQ GEVYVFDSVS PDKVQAVLLL LGGRELNPGL GAGSSSSTPY 180 SKRLNFPHRV ASLMRFREKR KERNFDKKIR YTVRKEVALR MQRNRGQFTS SKPKPDEATS 240 ELATPDGSPN WGSVEGRPPS AAECHHCGIN AKNTPMMRRG PDGPRTLCNA CGLMWANKGM 300 LRDLAKSTPT PLQVMVSAPN DSHLPLNKKI PQQWSPMVMS LQHEWGAAHF NWDRNIILE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g33980.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014753285.1 | 0.0 | GATA transcription factor 20 | ||||
Swissprot | Q5Z4U5 | 1e-139 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
TrEMBL | A0A0Q3NIS4 | 0.0 | A0A0Q3NIS4_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G33980.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4325 | 38 | 68 | Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 9e-76 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g33980.2.p |