PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g33801.1.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 384aa MW: 45004.4 Da PI: 9.9835

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g33801.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.4	8.6e-12	29	73	45	91
FAR1 45 kkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 + +k r++++ + t+C+ak++v++++ ++w vt++e +HnH+l+p Bradi1g33801.1.p 29 QG--KKPRKKNTIEITDCQAKMVVTLKEGDRWIVTSFEMQHNHALSP 73 33..47899999********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.1E-10	29	73	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.1E-33	193	287	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MTLKYTCRTS LLLHLSQVVR KSGLTHAVQG KKPRKKNTIE ITDCQAKMVV TLKEGDRWIV 60 TSFEMQHNHA LSPPGEAKYL RSHKHMTDHE KLLIRTLNSV KLPTRKIMTI LAVIRGGLSA 120 VPFTKKDVSN YKTAIRNETN QNDMMMVLDY FRKRQMQDPQ FYYAFKVGDE SKVENIFWVD 180 GNSRRFYQLY GDCISFDTTY RTNMYNLPFA PFVGVTGHAN NCLFACAILQ NETIDTFTWL 240 FQEFLLCMGG KMPQTIITDQ DVAMKHAIPK VFKKTTHRNC LFHIKKKAEE KCARCFATKK 300 MLHLEFNDVI NRSQTEEEFE SLWPAMLRKY NVEHIKYFQQ MWEMRKQFVP VYFKKDFSPS 360 YTRQQGVRAQ MLYSKIMLDQ HIA*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MTLKYTCRTS LLLHLSQVVR KSGLTHAVQG KKPRKKNTIE ITDCQAKMVV TLKEGDRWIV  60
TSFEMQHNHA LSPPGEAKYL RSHKHMTDHE KLLIRTLNSV KLPTRKIMTI LAVIRGGLSA  120
VPFTKKDVSN YKTAIRNETN QNDMMMVLDY FRKRQMQDPQ FYYAFKVGDE SKVENIFWVD  180
GNSRRFYQLY GDCISFDTTY RTNMYNLPFA PFVGVTGHAN NCLFACAILQ NETIDTFTWL  240
FQEFLLCMGG KMPQTIITDQ DVAMKHAIPK VFKKTTHRNC LFHIKKKAEE KCARCFATKK  300
MLHLEFNDVI NRSQTEEEFE SLWPAMLRKY NVEHIKYFQQ MWEMRKQFVP VYFKKDFSPS  360
YTRQQGVRAQ MLYSKIMLDQ HIA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g33801.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014757844.2	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024318808.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024318809.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K2DML3	0.0	A0A2K2DML3_BRADI; Uncharacterized protein
STRING	Sb01g017200.1	1e-125	(Sorghum bicolor)
STRING	Sb06g022290.1	1e-123	(Sorghum bicolor)
STRING	Sb09g023170.1	1e-122	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-78	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi1g33801.1.p