PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g33550.1.p | ||||||||
Common Name | BRADI_1g33550, LOC100831216 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 189aa MW: 20180.2 Da PI: 4.9256 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2.1e-18 | 20 | 69 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp++ ++ ++lg+f++ae+Aa+a++ a+++l+g Bradi1g33550.1.p 20 RYRGVRKRP-SGRYAAEIRDPTK---KTPIWLGTFDSAEDAARAYDTAARNLRG 69 59*******.7*********864...6*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.0E-30 | 20 | 78 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.6E-11 | 20 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-21 | 20 | 78 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.773 | 20 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.07E-27 | 20 | 77 | No hit | No description |
SMART | SM00380 | 5.2E-34 | 20 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-8 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-8 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MRKAKPPQPQ PQASPKVEIR YRGVRKRPSG RYAAEIRDPT KKTPIWLGTF DSAEDAARAY 60 DTAARNLRGP TARTNFPSAT PLPRPPAAAA TSSHSSTVES WSGGAPRAPA VARSAAPTDI 120 TGEEEEEEED CRSYCGSSSS VCEDDGDDAA ASRSPLPFDL NMPPPQDGAD ASAEADQMSF 180 RYDTLLRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-19 | 20 | 82 | 14 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g33550.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360018 | 3e-82 | AK360018.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1108I12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563465.1 | 1e-133 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | I1GWG7 | 1e-131 | I1GWG7_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G33550.1 | 1e-132 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6102 | 23 | 47 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 2e-18 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g33550.1.p |
Entrez Gene | 100831216 |