PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g33410.2.p
Common NameBRADI_1g33410, LOC100836714
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 618aa    MW: 70654.8 Da    PI: 10.069
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g33410.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.8e-09419459346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +WT+eE e++ + v++ G++ Wkt a+++g  +++ ++k+ w+ 
  Bradi1g33410.2.p 419 KWTQEEYEQIRRFVQENGTD-WKTLAQELG--KSRIHVKDAWRR 459
                       8*******************.********8..8******99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-5342399IPR009057Homeodomain-like
SMARTSM007171.6343414IPR001005SANT/Myb domain
PROSITE profilePS500904.983346412IPR017877Myb-like domain
PROSITE profilePS512949.128414465IPR017930Myb domain
SMARTSM007170.0024416463IPR001005SANT/Myb domain
SuperFamilySSF466892.84E-8417474IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-8419470IPR009057Homeodomain-like
PfamPF139212.6E-9420476No hitNo description
PROSITE profilePS500907.248462531IPR017877Myb-like domain
SMARTSM007170.029466533IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-6471532IPR009057Homeodomain-like
SuperFamilySSF466893.35E-6511588IPR009057Homeodomain-like
PROSITE profilePS500907.457533586IPR017877Myb-like domain
SMARTSM0071718537588IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MDAEHLEREN RHLKKKRKHR EGKAKDKSKH GEEAVISIVE EEGHKSKKQK CRSKGEKNNV  60
NSSDVFGSTN HGVGKEQAEK SGWMAVKHCL EHAEGDTSKA NVKKDKRKNK EDKRRRAETT  120
GQKQTFDTTV VKEASEQSDL RAVNDTSKDN VKKDKKKKKE AGMTMQKQIF HTAIANLGSD  180
HAKGHKVEGK LSSNSKLKKS KQKRKDGEPA LDISNCDQIV TREDNKRQKE HSFVLEQSSQ  240
NDNTNKGENR ETKKRENGSG KASPGLSLNV SAGGEEADVD GKNDKKKRKS KEVVGGGKKE  300
KEKAARSNNK GKRVSFADSM EVFTIEGGDD EDGGRSGESK LVHGKRFTPE EDTILMEAMK  360
NYAEMKQLGE KGLEMFRNSS KHPELKGCWS DIAKSLPHRP LGATYRRANV LLCRSAERKW  420
TQEEYEQIRR FVQENGTDWK TLAQELGKSR IHVKDAWRRI KPKNLKKGRW AQEEIQILFD  480
LVNIDLRLKA RQEKRIDDHR VLKDNISWEA ISDKMTTRSH KFCCLKWYQS LASPLVQQGI  540
WADVDDYLLV EALQKIDAVC IEDVDWDCLL DHRSGEVCRQ RWNQMVRLLG GHREKPFIEQ  600
VEVLSKRYCA DMIEYRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g33410.2.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227387.10.0RNA polymerase I termination factor
TrEMBLI1GWF20.0I1GWF2_BRADI; Uncharacterized protein
STRINGBRADI1G33410.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-98MYB_related family protein