PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g32330.1.p | ||||||||
Common Name | BRADI_1g32330, LOC100832932 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 338aa MW: 36154.8 Da PI: 6.3171 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.5 | 2.8e-12 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Bradi1g32330.1.p 70 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 114 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.44E-16 | 64 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.18 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-6 | 68 | 120 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-18 | 68 | 117 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.5E-10 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-10 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.38E-7 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MVSMSATPKP LEAAAAVVAG GGGGGDGAKA SGKQPPPPQQ QELVLAAPMA VPAEEEARKV 60 RKPYTITKSR ESWTEPEHDK FLEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK 120 NGTGEHLPPP RPKRKAAHPY PQKASKSALA APQAVSSQQP PLLTATRDQE GVMPMDTSIV 180 VPNTSANAAV PSWDNALVPF SADHTQGPGA GVATNNCSSS IESQSGTWPT SEAVEQENVL 240 PPLRAMPDFS QVYNFLGSVF DPDTSGHLQR LKAMDPIDME TAVLLMRNLA LNLTSPDFEA 300 HRKLLSSYGS DGDQIKSEGL ENIGSQSCHL PSMVTSE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g32330.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010240580.1 | 0.0 | protein REVEILLE 6 isoform X1 | ||||
Swissprot | Q8H0W3 | 3e-95 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A0Q3H2D3 | 0.0 | A0A0Q3H2D3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G32330.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1096 | 38 | 111 | Representative plant | OGRP928 | 15 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 5e-82 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g32330.1.p |
Entrez Gene | 100832932 |
Publications ? help Back to Top | |||
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