PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g31837.1.p

Common Name

BRADI_1g31837, LOC100834368

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 343aa MW: 36951 Da PI: 7.251

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g31837.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.3	1.7e-33	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Bradi1g31837.1.p 44 KPRLRWTVELHDRFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.1E-32	41	99	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.33	41	101	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-16	43	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.8E-24	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	4.7E-8	46	96	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-24	138	184	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MFPAAAVCSK KPGAVVSSSP NDRPCVVQGQ QGGDSGLVLT TDPKPRLRWT VELHDRFVDA 60 VAQLGGPDKA TPKTIMRVMG VKGLTLYHLK SHLQKFRLGK QHKEFGDHSS VKEAMEMQRN 120 AASSSGMMGR SMNDRSAHMN EALRMQVEVQ RRLHEQLEVQ KHLQLRVEAQ GKYMQSILEK 180 AYQTLASGGD CATWPAAGYR SLGGASMDVG SSMSFQDLTL YGSGSSHLDL QQQMEIRPTM 240 APMDSFLAFN ESCIGRRSPA DAGGSCYGRA AGKSPMMMMW AGDDQQAKSC GTDGDDQLLQ 300 MAPASTMMME AGGVDAMDPI MSMSGDSLGS NKGFDRGPEL QA*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MFPAAAVCSK KPGAVVSSSP NDRPCVVQGQ QGGDSGLVLT TDPKPRLRWT VELHDRFVDA  60
VAQLGGPDKA TPKTIMRVMG VKGLTLYHLK SHLQKFRLGK QHKEFGDHSS VKEAMEMQRN  120
AASSSGMMGR SMNDRSAHMN EALRMQVEVQ RRLHEQLEVQ KHLQLRVEAQ GKYMQSILEK  180
AYQTLASGGD CATWPAAGYR SLGGASMDVG SSMSFQDLTL YGSGSSHLDL QQQMEIRPTM  240
APMDSFLAFN ESCIGRRSPA DAGGSCYGRA AGKSPMMMMW AGDDQQAKSC GTDGDDQLLQ  300
MAPASTMMME AGGVDAMDPI MSMSGDSLGS NKGFDRGPEL QA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-18	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g31837.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365142	0.0	AK365142.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2031F05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003560412.1	0.0	myb family transcription factor APL
Swissprot	Q9SAK5	6e-85	APL_ARATH; Myb family transcription factor APL
TrEMBL	I1GVW2	0.0	I1GVW2_BRADI; Uncharacterized protein
STRING	BRADI1G31837.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2504	38	90
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	2e-78	G2-like family protein

Link Out ? help Back to Top
Phytozome	Bradi1g31837.1.p
Entrez Gene	100834368

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]