PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g31406.1.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 494aa MW: 56650.4 Da PI: 7.9622

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g31406.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.1	1.2e-17	114	211	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 Yn+YA ++GFs+r ++s++s+ + + + + eg ++ee++ +k+rr+++ ++t+Cka+++vk+ d +wevt + e Bradi1g31406.1.p 114 HYNAYALKLGFSIRSNTSRSSESLNLKVAVHISLKSEGDSDEESELdehafakgkkVVKKRRRETIKQTNCKARMMVKLI-DFRWEVTYFIGE 205 6******************999988999999999999999887799**99999999**************.9******* PP FAR1 85 HnHela 90 HnH+l+ Bradi1g31406.1.p 206 HNHPLT 211 **96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.4E-16	114	211	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.137	386	422	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0035	397	424	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MDILRMGDFD LNECPVELNV AVGIEEGYGT TSFALYCTQK LPDKDTHQYE GDCGESHNAN 60 ANAVDNLIHE RHQSIDAPGE VHIEEQYDGE EALSQPQEPF LGMRFDTLLC ARNHYNAYAL 120 KLGFSIRSNT SRSSESLNLK VAVHISLKSE GDSDEESELD EHAFAKGKKV VKKRRRETIK 180 QTNCKARMMV KLIDFRWEVT YFIGEHNHPL TAKPSLTKYL RRMMCLMSSF YGSGLLVPYR 240 TKAISNYRSK LRSQMKGCDM AETISYFSDK KLDDPNFYFS VLLDDEQRST QRSEGFNAVL 300 KRYVNPHNSI LNFVHQYEKI QLKILVKEGG NDYRTDHLKV QTWSSYPIEK AKFEMIGRYN 360 VKHLGGDVYK LVRNKKYSCN YGTRTYKVVA RIEEASYSCE CCKFLKYGLL CCHILKIFTR 420 CSVDEILEHY ILQRWTQQAI QGENAGASEG DQPDVMPEQS EKQIRLANLS VQFGKFAKFA 480 SASAASKEIA KKHM

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MDILRMGDFD LNECPVELNV AVGIEEGYGT TSFALYCTQK LPDKDTHQYE GDCGESHNAN  60
ANAVDNLIHE RHQSIDAPGE VHIEEQYDGE EALSQPQEPF LGMRFDTLLC ARNHYNAYAL  120
KLGFSIRSNT SRSSESLNLK VAVHISLKSE GDSDEESELD EHAFAKGKKV VKKRRRETIK  180
QTNCKARMMV KLIDFRWEVT YFIGEHNHPL TAKPSLTKYL RRMMCLMSSF YGSGLLVPYR  240
TKAISNYRSK LRSQMKGCDM AETISYFSDK KLDDPNFYFS VLLDDEQRST QRSEGFNAVL  300
KRYVNPHNSI LNFVHQYEKI QLKILVKEGG NDYRTDHLKV QTWSSYPIEK AKFEMIGRYN  360
VKHLGGDVYK LVRNKKYSCN YGTRTYKVVA RIEEASYSCE CCKFLKYGLL CCHILKIFTR  420
CSVDEILEHY ILQRWTQQAI QGENAGASEG DQPDVMPEQS EKQIRLANLS VQFGKFAKFA  480
SASAASKEIA KKHM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g31406.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0Q3JGD3	0.0	A0A0Q3JGD3_BRADI; Uncharacterized protein (Fragment)
STRING	BRADI1G10750.1	1e-163	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9528	8	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-10	far-red elongated hypocotyls 3

Link Out ? help Back to Top
Phytozome	Bradi1g31406.1.p