PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g31391.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family SBP
Protein Properties Length: 417aa    MW: 44743.7 Da    PI: 8.9646
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g31391.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.51.2e-40169245177
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                       +Cq+egC+adls ak+yhrrhkvCe h+ka+ v + g++qrfCqqCsrfh l+efDe+krsCr+rLa+hn+rrrk++
  Bradi1g31391.2.p 169 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASLVSAGGKHQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRKPA 245
                       6**************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.7E-34162231IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.282167244IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-38168247IPR004333Transcription factor, SBP-box
PfamPF031101.2E-30170243IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MMSGRMNNST GSDDFPFAPT PPPSYGGFEQ RALYDSFDFA AAFQFQHQQE HHQMLSLPPN  60
ANTSNLLHHP MAPPPPPAAM SMQLPIPMPQ MHGHGGDAMI YPALGMAVKR EGEVAEGRNI  120
GLNLGRRTYF SPGDMMAVDR LLMRSRLGGV FGLGFGGPGG HGHHHQPPRC QAEGCKADLS  180
GAKHYHRRHK VCEYHAKASL VSAGGKHQRF CQQCSRFHVL TEFDEAKRSC RKRLAEHNRR  240
RRKPATTNGT ATSAAKDSAT PPSSKKPNNG AGGAIIGSYT VDNKTLSAAK SSTISSNTSG  300
ISCLQQQQQD QSKAAAAAAL TLGGSPQDQS NAVHQLAGHG HGHHHQEQHF ITSLLHNNNN  360
NNNGNNNNIL SCSSVCSNAM PPPATANNGG GEVSDQNNHH GNNNSNNMHL FEVDFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-291702431184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226243KRSCRKRLAEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g31391.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478781e-120KF447878.1 Triticum aestivum squamosa promoter-binding-like protein 20 (SPL20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560391.10.0squamosa promoter-binding-like protein 10
SwissprotA2YFT97e-96SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE87e-96SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLA0A0Q3H1V40.0A0A0Q3H1V4_BRADI; Uncharacterized protein
STRINGBRADI1G31390.11e-173(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.18e-48squamosa promoter binding protein-like 8