PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g30801.1.p
Common NameBRADI_1g30801
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 465aa    MW: 51462.5 Da    PI: 9.5357
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g30801.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like681.5e-21185238155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       +pr+ Wt+eLH++F +a +qL G+  A+Pk+i e+m+v+ +++  v+SHLQkYR 
  Bradi1g30801.1.p 185 RPRVTWTKELHDKFEDAYHQL-GKADAVPKKICEMMNVDYISRLTVASHLQKYRA 238
                       59*******************.9999****************************7 PP
2Response_reg56.51.6e-19131211109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH.HHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell.kekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                       vl +d +++ +++l +al++ +y +v+ + d++ al++l +  +  + l +  +emp+ +G++ll+ i+ +   +p+i+vta+ + e++ + +
  Bradi1g30801.1.p  13 VLAIDANHDSLKALVSALRHLDY-NVTPVMDAKTALQTLwE-AKepFKLAIGEVEMPDTNGVDLLRYIKLQT-GIPVIAVTANMDTETVMKGM 102
                       788999*****************.88888888888887743.3336**********************9988.9******************* PP

                       HTTESEEEESS--HHHHHH CS
      Response_reg  91 kaGakdflsKpfdpeelvk 109
                       + G+  +l Kp+  e+l++
  Bradi1g30801.1.p 103 EHGVCNYLLKPVRVEQLRN 121
                       *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.4E-289131IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.0E-2810134No hitNo description
SMARTSM004481.8E-1711123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011032.80812127IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.6E-1713122IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.25E-1914127No hitNo description
SuperFamilySSF466898.6E-17183242IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-23183243IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-19186238IPR006447Myb domain, plants
PfamPF002491.8E-6187237IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MASRGEFWSG RRVLAIDANH DSLKALVSAL RHLDYNVTPV MDAKTALQTL WEAKEPFKLA  60
IGEVEMPDTN GVDLLRYIKL QTGIPVIAVT ANMDTETVMK GMEHGVCNYL LKPVRVEQLR  120
NICQHALRRN PAAWNDEGDA NQRVQSAGIV EGDPGPKSTS MKNSERIIDG DADSDENMGL  180
KHSRRPRVTW TKELHDKFED AYHQLGKADA VPKKICEMMN VDYISRLTVA SHLQKYRAYL  240
RRISDPKARA SRRRNSSMSN LESSRHYVEN RIPRPSSVVA SSSSNNPFTT RPIEPRKNLG  300
KKKAVKHGAR SRKSKDHAKA LCGFLLNTNQ GKACSHLDYP FENMPDEETL QPVNQLPVQP  360
PELVSQPSVM MNAPAFFQKQ DAPATNLVGA LSDASKYFPN LVGNCNPWQT ALPSMFPGPS  420
QVNIPEISQL TSFAGTSSSQ MPMVTNEMSN PVAAFISSST PGRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-15184244464ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g30801.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311819.11e-95two-component response regulator ORR24
TrEMBLA0A0Q3NHB50.0A0A0Q3NHB5_BRADI; Uncharacterized protein
STRINGBRADI5G12160.11e-133(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4985622
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-53response regulator 12