PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g30337.2.p
Common NameBRADI_1g30337, LOC100831490
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 379aa    MW: 40856.6 Da    PI: 9.1035
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g30337.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-18104153155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Bradi1g30337.2.p 104 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 153
                       78*******************......55************************997 PP
2AP236.99.1e-12196246155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+++GV+ +k  g+W+A+I         +k ++lg ++t+ +Aaka+++a+++  g
  Bradi1g30337.2.p 196 SRFRGVTLHK-CGKWEARIGQlM----GKKFVYLGLYDTEMDAAKAYDKAALSCGG 246
                       789*******.7******77733....25**********77**********98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-15104161IPR016177DNA-binding domain
PfamPF008476.8E-10104153IPR001471AP2/ERF domain
SMARTSM003803.2E-31105167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-17105155IPR001471AP2/ERF domain
PROSITE profilePS5103217.649105161IPR001471AP2/ERF domain
Gene3DG3DSA:2.30.30.1003.9E-4156196No hitNo description
SuperFamilySSF541719.15E-16196255IPR016177DNA-binding domain
CDDcd000184.19E-11196254No hitNo description
PfamPF008472.1E-6196246IPR001471AP2/ERF domain
SMARTSM003801.3E-25197260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-15197254IPR001471AP2/ERF domain
PROSITE profilePS5103214.882197254IPR001471AP2/ERF domain
PRINTSPR003674.3E-5198209IPR001471AP2/ERF domain
PRINTSPR003674.3E-5236256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAATRRSAFF YGAGGIALAA GGDEEMAEED GRRRFAPVRP AVVTQQLFPM TTAAAMAAGA  60
RQTQQQQLAV EQCVMAGAAA GGAGGQWARP ASRKSRRGPR SRSSQYRGVT FYRRTGRWES  120
HIWDCGKQVY LGGFDTAQAA ARAYDQAAIK FRGVDADINF VLDDYEEEIK KMSSFSKEEF  180
VHVLRRQGAG FVRGSSRFRG VTLHKCGKWE ARIGQLMGKK FVYLGLYDTE MDAAKAYDKA  240
ALSCGGEDAV TNFEPEAACD GGEPDLELSL GYSGGVGTTA HAAAAPPQGH RRRTSLTLET  300
PEEEEKGRAC YYHGNNMSIW TRPSSTPNSA PGDHRQPYPA AARAAVAASS GFPPELGAAA  360
GVQQLNHHHR QGGRQPWQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g30337.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3573931e-175AK357393.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560338.10.0floral homeotic protein APETALA 2
RefseqXP_024313700.10.0floral homeotic protein APETALA 2
SwissprotA0A0N7KMH01e-128AP24_ORYSJ; APETALA2-like protein 4
TrEMBLI1GVD30.0I1GVD3_BRADI; Uncharacterized protein
STRINGBRADI1G30337.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-80AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]