PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g30337.1.p | ||||||||
Common Name | BRADI_1g30337, LOC100831490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | AP2 | ||||||||
Protein Properties | Length: 379aa MW: 40856.6 Da PI: 9.1035 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.2e-18 | 104 | 153 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g Bradi1g30337.1.p 104 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 153 78*******************......55************************997 PP | |||||||
2 | AP2 | 36.9 | 9.1e-12 | 196 | 246 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k g+W+A+I +k ++lg ++t+ +Aaka+++a+++ g Bradi1g30337.1.p 196 SRFRGVTLHK-CGKWEARIGQlM----GKKFVYLGLYDTEMDAAKAYDKAALSCGG 246 789*******.7******77733....25**********77**********98665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.18E-15 | 104 | 161 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.8E-10 | 104 | 153 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-31 | 105 | 167 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-17 | 105 | 155 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.649 | 105 | 161 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.30.30.100 | 3.9E-4 | 156 | 196 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-16 | 196 | 255 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.19E-11 | 196 | 254 | No hit | No description |
Pfam | PF00847 | 2.1E-6 | 196 | 246 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-25 | 197 | 260 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-15 | 197 | 254 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.882 | 197 | 254 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-5 | 198 | 209 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-5 | 236 | 256 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MAATRRSAFF YGAGGIALAA GGDEEMAEED GRRRFAPVRP AVVTQQLFPM TTAAAMAAGA 60 RQTQQQQLAV EQCVMAGAAA GGAGGQWARP ASRKSRRGPR SRSSQYRGVT FYRRTGRWES 120 HIWDCGKQVY LGGFDTAQAA ARAYDQAAIK FRGVDADINF VLDDYEEEIK KMSSFSKEEF 180 VHVLRRQGAG FVRGSSRFRG VTLHKCGKWE ARIGQLMGKK FVYLGLYDTE MDAAKAYDKA 240 ALSCGGEDAV TNFEPEAACD GGEPDLELSL GYSGGVGTTA HAAAAPPQGH RRRTSLTLET 300 PEEEEKGRAC YYHGNNMSIW TRPSSTPNSA PGDHRQPYPA AARAAVAASS GFPPELGAAA 360 GVQQLNHHHR QGGRQPWQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g30337.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357393 | 1e-175 | AK357393.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052F01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560338.1 | 0.0 | floral homeotic protein APETALA 2 | ||||
Refseq | XP_024313700.1 | 0.0 | floral homeotic protein APETALA 2 | ||||
Swissprot | A0A0N7KMH0 | 1e-128 | AP24_ORYSJ; APETALA2-like protein 4 | ||||
TrEMBL | I1GVD3 | 0.0 | I1GVD3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G30337.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11821 | 34 | 39 | Representative plant | OGRP497 | 17 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 2e-80 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g30337.1.p |
Entrez Gene | 100831490 |
Publications ? help Back to Top | |||
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