PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g29857.1.p | ||||||||
Common Name | BRADI_1g29857, LOC100842110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 305aa MW: 34004.4 Da PI: 7.8817 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 137 | 1.2e-42 | 6 | 146 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkkya..tgk....rknratks 80 pGfrFhPt+eel+ +yLk+ ++g+kl++ ++i++v++y+++PwdLp+ + + +++ewyfF++rd+ + + + r++r+t++ Bradi1g29857.1.p 6 PGFRFHPTEEELLEFYLKQAAHGRKLKF-DIIPTVHLYRHDPWDLPAlagdiihhgSSSCNSREWYFFVPRDSGRKlnQ-QqaagRPSRTTER 96 9**************************9.99***************66788876653333778*******997655331.1344599****** PP NAM 81 gyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+Wkatg+d++v + ++l+glkktLv+y+grap+g+ktdWvm+eyrl Bradi1g29857.1.p 97 GFWKATGSDRAVRCGadPKRLIGLKKTLVYYQGRAPRGSKTDWVMNEYRL 146 *************97666778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 48.818 | 4 | 177 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-46 | 5 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-24 | 6 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MELELPGFRF HPTEEELLEF YLKQAAHGRK LKFDIIPTVH LYRHDPWDLP ALAGDIIHHG 60 SSSCNSREWY FFVPRDSGRK LNQQQAAGRP SRTTERGFWK ATGSDRAVRC GADPKRLIGL 120 KKTLVYYQGR APRGSKTDWV MNEYRLPEDA MAGGGGNNKV QLLQDRQELV LCKVYRKAVS 180 LKELEQRVAM EELARSGHGG SSSAASSHCT GSPDAAGSMS SDVVQYEAAH HYDGVKIEEA 240 AAAAAAVAKP AAMRLPELET TRMEWLSQPQ QQDPFQLTSS QLRSPWMMES FCLSPCYQSS 300 LLNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-39 | 2 | 177 | 12 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g29857.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU967633 | 3e-49 | EU967633.1 Zea mays clone 304978 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014752297.1 | 0.0 | NAC domain-containing protein 22 | ||||
Swissprot | Q10S65 | 3e-87 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | I1GV81 | 0.0 | I1GV81_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G29857.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1770 | 38 | 105 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 6e-69 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g29857.1.p |
Entrez Gene | 100842110 |
Publications ? help Back to Top | |||
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