PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi1g29826.1.p | ||||||||
Common Name | BRADI_1g29826 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 171aa MW: 18205.6 Da PI: 8.8838 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20 | 1.9e-06 | 57 | 79 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ ++ s L+ H+ + H Bradi1g29826.1.p 57 ECGICGRALRTASALRAHMLRcH 79 7*******************955 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00049 | 93 | 115 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F ++ L H ++H Bradi1g29826.1.p 93 FVCGRCGRRFLTWWALGGHRSSH 115 89*************99999988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.263 | 56 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 56 | 79 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.008 | 57 | 79 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.28E-8 | 57 | 115 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 58 | 79 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.5E-4 | 91 | 119 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 4.6E-4 | 93 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.679 | 93 | 120 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.9 | 93 | 115 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence Send to blast |
MAASSFFLLG RRLAVSSFVS GAGGGGGDEP PRYNPWRLKS AHELDDGGSL ARPSSLECGI 60 CGRALRTASA LRAHMLRCHA DVDPAAPPPV RPFVCGRCGR RFLTWWALGG HRSSHNGRKG 120 CSRLSKQQHA QAMAARAPKP AVVRDFDLNE PPAPETEEEE NEDPVAPAAK * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi1g29826.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0Q3H0Y5 | 1e-119 | A0A0Q3H0Y5_BRADI; Uncharacterized protein | ||||
STRING | LPERR06G23490.1 | 7e-20 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13010 | 27 | 29 | Representative plant | OGRP11373 | 2 | 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi1g29826.1.p |