PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g29823.1.p
Common NameBRADI_1g29823
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 186aa    MW: 19867.6 Da    PI: 8.8545
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g29823.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.6e-055477123
                      EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                      ++C +Cg +F+++ + +rH+ + H
  Bradi1g29823.1.p 54 FECAICGSTFRTPKSCRRHMVRsH 77
                      89******************9988 PP
2zf-C2H2140.0001596118123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C+ Cgk+F ++  L  H ++H
  Bradi1g29823.1.p  96 HACQRCGKRFLTWRALAGHRSNH 118
                       67******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.3E-652118No hitNo description
PROSITE profilePS501579.645482IPR007087Zinc finger, C2H2
SMARTSM003550.00885477IPR015880Zinc finger, C2H2-like
PfamPF139120.0525479IPR007087Zinc finger, C2H2
PROSITE patternPS0002805677IPR007087Zinc finger, C2H2
SMARTSM003550.3896118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.11896123IPR007087Zinc finger, C2H2
PfamPF139125.3E-496119IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAATSRYFPR LSLGLSGTGS GGDEDKPPRY QPMRVKSAHE LDDARFIDPL QKCFECAICG  60
STFRTPKSCR RHMVRSHRGG LAPGAPVPVA PVVLRHACQR CGKRFLTWRA LAGHRSNHNG  120
KLGQAAVAAI AAATAAAAAA AAAPPPPPVV IARDFDLNEL PPEAEEEEQQ QVEKEKEKEK  180
DPAAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g29823.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3NGZ51e-132A0A0Q3NGZ5_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4985322