PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g29820.1.p | ||||||||
Common Name | BRADI_1g29820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 196aa MW: 21024.6 Da PI: 8.5069 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.4 | 5.9e-06 | 81 | 102 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp C ++F+++ + H+r+H Bradi1g29820.1.p 81 RCPVCERTFRTPKGVHGHMRVH 102 7*******************99 PP | |||||||
2 | zf-C2H2 | 15.2 | 6.3e-05 | 126 | 148 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +Cg+ F+++ +L H +H Bradi1g29820.1.p 126 YECAHCGTQFPTRQSLGGHRASH 148 99**************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.005 | 80 | 102 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.702 | 80 | 107 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13894 | 4.4E-4 | 81 | 102 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.4E-4 | 81 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.22E-7 | 81 | 148 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.9E-8 | 125 | 150 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.078 | 126 | 148 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.907 | 126 | 150 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 128 | 148 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MASSPFVMSG AGQVHPHLLA SSGGGGGDDP SNNWPYNLPS SHALDTTAVV LSNLTIKKKK 60 KKKKKKGAGA GEEGPLIIQI RCPVCERTFR TPKGVHGHMR VHTDRGWRGM DPAPPPPPHA 120 AAGYRYECAH CGTQFPTRQS LGGHRASHSG IPGCSELSRI VQLQQQQQRV VRPFDLNELP 180 ATEAEEENED PDGDN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 56 | 65 | KKKKKKKKKK |
2 | 57 | 65 | KKKKKKKKK |
3 | 59 | 65 | KKKKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g29820.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | I1GV76 | 1e-143 | I1GV76_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G29820.1 | 1e-144 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13010 | 27 | 29 | Representative plant | OGRP11373 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 6e-07 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g29820.1.p |