PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g29680.2.p
Common NameBRADI_1g29680, LOC100837761
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 409aa    MW: 45243.9 Da    PI: 6.4521
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g29680.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-173377147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      r +WT+eE+e++++a k++G   W+ I +++g ++t+ q++s+ qk+
  Bradi1g29680.2.p 33 REKWTEEEHERFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 77
                      789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.68E-162781IPR009057Homeodomain-like
PROSITE profilePS5129422.1782882IPR017930Myb domain
TIGRFAMsTIGR015572.7E-163180IPR006447Myb domain, plants
SMARTSM007173.8E-143280IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-103373IPR009057Homeodomain-like
PfamPF002491.1E-143376IPR001005SANT/Myb domain
CDDcd001672.64E-113578No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MMDDSIAMQS KEEGMGDEHP VKARKPYTIT KQREKWTEEE HERFLEALKL YGRSWRQIQE  60
HIGTKTAVQI RSHAQKFFSK VVREPGAKIE IEIPPPRPKR KPLHPYPRKR ANSCNGANPA  120
AGQPKIAPLS SSSGSDQENG SPVSVLSAMQ ADAFGSSMSN PSTQCSSPAS SDDENNVPPL  180
MSGDENVPCQ QTGVDQSHKE IDQDNKDTGM SEEDSSDEVQ ETSLKLFGKT VVITDPRKRC  240
SPDAGHENGE QNSQSSNQRT SQSPPVGEVP AYTATSGWLL PYNSFPLHFC ESADTRMAPL  300
HMYWPYYGFP IGHPRGGTNM VVHNEATNEN DTGKSHPVES SSDTEDNDQT ASKKREVTEP  360
HGRIQFSWLT PNFELKPSTN SAFVRVKPNS GGNQPSRGFM PYKRCRVE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g29680.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563237.10.0protein REVEILLE 1 isoform X1
TrEMBLI1GV560.0I1GV56_BRADI; Uncharacterized protein
STRINGBRADI1G29680.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.15e-39MYB_related family protein