PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g29680.1.p | ||||||||
Common Name | BRADI_1g29680, LOC100837761 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 442aa MW: 48607.7 Da PI: 6.0677 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.2e-17 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE+e++++a k++G W+ I +++g ++t+ q++s+ qk+ Bradi1g29680.1.p 66 REKWTEEEHERFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 110 789*****************55.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.43E-16 | 60 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.178 | 61 | 115 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.0E-16 | 64 | 113 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.8E-14 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 66 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-10 | 66 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.13E-11 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MASSMALAEE KDGLDSSCLP INNGQSSDVV KSPMMDDSIA MQSKEEGMGD EHPVKARKPY 60 TITKQREKWT EEEHERFLEA LKLYGRSWRQ IQEHIGTKTA VQIRSHAQKF FSKVVREPGA 120 KIEIEIPPPR PKRKPLHPYP RKRANSCNGA NPAAGQPKIA PLSSSSGSDQ ENGSPVSVLS 180 AMQADAFGSS MSNPSTQCSS PASSDDENNV PPLMSGDENV PCQQTGVDQS HKEIDQDNKD 240 TGMSEEDSSD EVQETSLKLF GKTVVITDPR KRCSPDAGHE NGEQNSQSSN QRTSQSPPVG 300 EVPAYTATSG WLLPYNSFPL HFCESADTRM APLHMYWPYY GFPIGHPRGG TNMVVHNEAT 360 NENDTGKSHP VESSSDTEDN DQTASKKREV TEPHGRIQFS WLTPNFELKP STNSAFVRVK 420 PNSGGNQPSR GFMPYKRCRV E* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g29680.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563237.1 | 0.0 | protein REVEILLE 1 isoform X1 | ||||
TrEMBL | I1GV56 | 0.0 | I1GV56_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G29680.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7783 | 36 | 47 | Representative plant | OGRP1255 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 7e-39 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g29680.1.p |
Entrez Gene | 100837761 |