PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g29030.1.p
Common NameBRADI_1g29030
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 543aa    MW: 61927.3 Da    PI: 7.5896
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g29030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.23.5e-1063150190
              FAR1   1 kfYneYAkevGFsvrksks..kks..krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       +++n Y+ e+GF +r  +s  +ks     + ++ rt++   +g +   +      ++++++ r+ C   +++ +++d+ w++++++leHnH l
  Bradi1g29030.1.p  63 EYFNLYSWEIGFGIRYGRShnYKSksGPRKDVIYRTMQNIVYGCEGFPT------KKNTSSIRCACGTFIRLLRSDDHGWYIKDCKLEHNHLL 149
                       589***********97654005552222344555555555555555544......45899*******************************98 PP

              FAR1  90 a 90 
                       +
  Bradi1g29030.1.p 150 S 150
                       6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-663150IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.248288324IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MEQFIPHHLW KVLTKSGARL GHDSGVSASS CRYRRKKFEI GPSTRPGYLA ELALLRIHLE  60
AYEYFNLYSW EIGFGIRYGR SHNYKSKSGP RKDVIYRTMQ NIVYGCEGFP TKKNTSSIRC  120
ACGTFIRLLR SDDHGWYIKD CKLEHNHLLS RNIGEKLCWP SHKHIDRYTR ELVRNLRQNN  180
VPLTKVYIIL GKYFGSTDDV PFNKRSLENF CKQLSKEEAN DDGGVVLKTG WPIEKHAATI  240
YTSAMLEMFS DHIFDSAAYN YIEVVPNKKY LTVHSDASRR QKWSKVHYEI TISDDGGHYQ  300
CECGLAEHMG MLCCHAIRVM MRLGIDKVPD SHILKRWTKE ASDVLPHHLA HLQKDRGSLR  360
SQSYRHASLH VAALELATIG DKNIECYHQV IKYMSDGKDK FNEMCQHTDG RSLQEIIAQT  420
ELPSPAPADS GQLHVGVIAP GDFCMNNYIC SDVPILSCNR LDYDKFMLME YEFEADALRH  480
MDAPNFVNLQ EEVADNGMKL PSGNEPQRCT EGKDEEGTQL SDDGSSTERS TKVGAAERRK  540
LE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g29030.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1GUX30.0I1GUX3_BRADI; Uncharacterized protein
STRINGBRADI1G29030.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.11e-10FAR1-related sequence 12