PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g28400.1.p
Common NameBRADI_1g28400, LOC100837152
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRF
Protein Properties Length: 264aa    MW: 28467.4 Da    PI: 4.5175
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g28400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC70.42.3e-22177220245
               WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r  + ++e
  Bradi1g28400.1.p 177 LEPGRCRRTDGKKWRCWRKTIPNEKYCERHMHRGRKRPVRLVVE 220
                       59***********************************9998876 PP
2QLQ49.61.2e-17110145237
               QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                        FTa Qlq+L++Q  +y+y+aa++PvP +L+++i+k
  Bradi1g28400.1.p 110 LFTAIQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 145
                       6*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.8E-7109145IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.126110145IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.3E-11111144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.225176220IPR014977WRC domain
PfamPF088796.9E-19178216IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEAEGEAKDT NHVGGSGGGE NTLEAAEEVL HEAGGHESSQ EPEGEGEEEE NKDREGKYDD  60
AGKEDNGCKE IVLVEDPVLV EDPEEAAATA ALQEEMRVLV ASVPEGAGAL FTAIQLQELE  120
QQSRVYQYMA ARVPVPTHLV FPIWKSVTGA SSEGAQNYPT LMGLATLCLD FGKSPELEPG  180
RCRRTDGKKW RCWRKTIPNE KYCERHMHRG RKRPVRLVVE DDEPDSASTS SSGKVAEGGK  240
KTDDKSSSSK KPAVAAPATV EST*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209216GRKRPVRL
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g28400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563152.10.0growth-regulating factor 11
SwissprotA5HEG91e-126GRF10_MAIZE; GRF-interacting factor 10
TrEMBLI1GUN60.0I1GUN6_BRADI; Uncharacterized protein
STRINGBRADI1G28400.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67353152
Representative plantOGRP1193646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-29growth-regulating factor 5
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  3. Zhang D, et al.
    GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize.
    Plant Cell, 2018. 30(2): p. 360-374
    [PMID:29437990]