PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g26980.5.p | ||||||||
Common Name | BRADI_1g26980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 847aa MW: 93172.1 Da PI: 8.0703 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.5 | 8.3e-22 | 75 | 176 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkek.dgkwevtk 80 +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk ++ + + +rtgC a+l++k+ + ++vt+ Bradi1g26980.5.p 75 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdetnsalvaaaASPPPPRCPDSRTGCMASLTIKLIPsANAFRVTD 166 6*****************99997666.****************9999666666665554444444889***************9999****** PP FAR1 81 leleHnHela 90 ++ eHnH+la Bradi1g26980.5.p 167 FVIEHNHPLA 176 ********97 PP | |||||||
2 | FAR1 | 68.4 | 1.8e-21 | 224 | 323 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 fYn+YA++vGFsvr+s++k++ g i++r fvCs+eg +++ k++ + + r + trtgC+a++++k + +++v+k+ Bradi1g26980.5.p 224 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKHEglaiastntgtgaAGTPRPGPPPTRTGCQARMVIKITPCRTYRVAKF 314 9*************9976665..999****************9999*******9998876677778899************************ PP FAR1 82 eleHnHela 90 +HnH+la Bradi1g26980.5.p 315 FADHNHPLA 323 *******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-18 | 75 | 176 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.7E-18 | 224 | 323 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.6E-22 | 412 | 506 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.619 | 653 | 700 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 6.1E-6 | 654 | 699 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.0E-6 | 675 | 702 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MSTAAQPPIS VSGDSSPSSP TTSGSSSRSS SAAAAGSEDP ALLGQATSTS AGDDAAVPTS 60 PRMGMYFETE EDAYEFYKAY AARLGFVVRK SNKSKNSRHT VTRRLFVCSK QGFRQEPKKP 120 QDETNSALVA AAASPPPPRC PDSRTGCMAS LTIKLIPSAN AFRVTDFVIE HNHPLASAAP 180 ALSLAMIPSS SSHHTIAAAA SLPDPRDGPR TDMHFETEDD AYVFYNRYAE HVGFSVRRSY 240 KKRKRGVIVS RIFVCSREGV SDRAKHEGLA IASTNTGTGA AGTPRPGPPP TRTGCQARMV 300 IKITPCRTYR VAKFFADHNH PLANSETVHK LRSHKMKARA HELGTGEHHR KKQGKGVQLG 360 DAGAALEYLE RLQVGNPSVY YAVGMGPDGH SATNFFWADA KSIIDFRSFG DVVCFDTTYE 420 LNVYGRPFAL FVGVDNHKQL LVFGAALLYD DSIQSLKWVF QAFADAMRAR QPKTILIDER 480 SACAIAAAEV WPGSNYCTSV WHIYHNSKRH LKQVFENSKS FGNALSQCLF DCEDEMEFLS 540 AWEKLVEKHE ISEGEWLSRL FLEKEKWALP YRRTMFSADI ITTLRKDNMI NELKRELSEQ 600 EDILQFFKRY ETMLEEHRSK KLQADVDGNQ GEFEAYMNCM SFPCSGIGTI SEHKVTLDEK 660 PSEGIVKFDA LDGSATCSCR KFESVGIQCC HVLKVLDLKN IKELPEQYIL KRWRKDARSV 720 RMGEEPNYGS VSSMRSSSEV RFGNMCRFVS LIASRAAKSE EAVAYIGSQS SVLLKQLDDI 780 LQTGYPEIGN RDVASSSQAI SFVGNQHPDH TTQARAVAQA NGLTSLLGIS ACPEPNGQLN 840 GSVGSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g26980.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563073.3 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
TrEMBL | A0A2K2DL92 | 0.0 | A0A2K2DL92_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G26980.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-76 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g26980.5.p |