PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g26980.2.p
Common NameBRADI_1g26980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 874aa    MW: 96236.8 Da    PI: 8.236
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g26980.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.48.7e-2275176190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkek.dgkwevtk 80 
                       +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk             ++    + + +rtgC a+l++k+    + ++vt+
  Bradi1g26980.2.p  75 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdetnsalvaaaASPPPPRCPDSRTGCMASLTIKLIPsANAFRVTD 166
                       6*****************99997666.****************9999666666665554444444889***************9999****** PP

              FAR1  81 leleHnHela 90 
                       ++ eHnH+la
  Bradi1g26980.2.p 167 FVIEHNHPLA 176
                       ********97 PP

2FAR168.31.8e-21224323290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                       fYn+YA++vGFsvr+s++k++   g i++r fvCs+eg +++ k++             + + r   + trtgC+a++++k +   +++v+k+
  Bradi1g26980.2.p 224 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKHEglaiastntgtgaAGTPRPGPPPTRTGCQARMVIKITPCRTYRVAKF 314
                       9*************9976665..999****************9999*******9998876677778899************************ PP

              FAR1  82 eleHnHela 90 
                         +HnH+la
  Bradi1g26980.2.p 315 FADHNHPLA 323
                       *******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1875176IPR004330FAR1 DNA binding domain
PfamPF031011.8E-18224323IPR004330FAR1 DNA binding domain
PfamPF105515.9E-22412506IPR018289MULE transposase domain
PROSITE profilePS509669.619680727IPR007527Zinc finger, SWIM-type
PfamPF044346.4E-6681726IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-6702729IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MSTAAQPPIS VSGDSSPSSP TTSGSSSRSS SAAAAGSEDP ALLGQATSTS AGDDAAVPTS  60
PRMGMYFETE EDAYEFYKAY AARLGFVVRK SNKSKNSRHT VTRRLFVCSK QGFRQEPKKP  120
QDETNSALVA AAASPPPPRC PDSRTGCMAS LTIKLIPSAN AFRVTDFVIE HNHPLASAAP  180
ALSLAMIPSS SSHHTIAAAA SLPDPRDGPR TDMHFETEDD AYVFYNRYAE HVGFSVRRSY  240
KKRKRGVIVS RIFVCSREGV SDRAKHEGLA IASTNTGTGA AGTPRPGPPP TRTGCQARMV  300
IKITPCRTYR VAKFFADHNH PLANSETVHK LRSHKMKARA HELGTGEHHR KKQGKGVQLG  360
DAGAALEYLE RLQVGNPSVY YAVGMGPDGH SATNFFWADA KSIIDFRSFG DVVCFDTTYE  420
LNVYGRPFAL FVGVDNHKQL LVFGAALLYD DSIQSLKWVF QAFADAMRAR QPKTILIDER  480
SACAIAAAEV WPGSNYCTSV WHIYHNSKRH LKQVFENSKS FGNALSQCLF DCEDEMEFLS  540
AWEKLVEKHE ISEGEWLSRL FLEKEKWALP YRRTMFSADI ITTLRKDNMI NELKRELSEQ  600
EDILQFFKRY ETMLEEHRSK KLQADVDGNQ VTLPIPSLRM LKQASNAYTP EAFKMFQGEF  660
EAYMNCMSFP CSGIGTISEH KVTLDEKPSE GIVKFDALDG SATCSCRKFE SVGIQCCHVL  720
KVLDLKNIKE LPEQYILKRW RKDARSVRMG EEPNYGSVSS MRSSSEVRFG NMCRFVSLIA  780
SRAAKSEEAV AYIGSQSSVL LKQLDDILQT GYPEIGNRDV ASSSQAISFV GNQHPDHTTQ  840
ARAVAQANGL TSLLGISACP EPNGQLNGSV GSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g26980.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563073.30.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A2K2DLB30.0A0A2K2DLB3_BRADI; Uncharacterized protein
STRINGBRADI1G26980.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1399044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-85FAR1-related sequence 5