PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi1g26720.1.p | ||||||||
Common Name | BRADI_1g26720, LOC100843215 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 193aa MW: 20049.3 Da PI: 10.5249 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.2 | 1.8e-41 | 85 | 161 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+e+C adl+eak+yhrrhkvCe+h+ka+vvlv+gl+qrfCqqCsrfhel efD++krsCrrrLa+hnerrrk++a Bradi1g26720.1.p 85 CQAERCPADLTEAKRYHRRHKVCEAHAKAAVVLVAGLRQRFCQQCSRFHELLEFDDTKRSCRRRLAGHNERRRKSSA 161 **************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.7E-34 | 78 | 146 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.941 | 82 | 159 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.28E-38 | 83 | 162 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.2E-31 | 85 | 158 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence Send to blast |
MDRKDKSRKS SSSAASMAAL AAAGGDRMAP PSSGDEDQKP NLVNVPVVAT GASSSSAAAV 60 RRGGGGGAAG GPVAVGGAGA GGPSCQAERC PADLTEAKRY HRRHKVCEAH AKAAVVLVAG 120 LRQRFCQQCS RFHELLEFDD TKRSCRRRLA GHNERRRKSS ADANGGDGCR HVDQDGRSNP 180 GNPPPLNHFQ IR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-38 | 76 | 158 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi1g26720.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP096626 | 1e-113 | FP096626.1 Phyllostachys edulis cDNA clone: bphylf027p18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560169.3 | 1e-136 | squamosa promoter-binding-like protein 13 | ||||
Swissprot | Q6Z461 | 1e-48 | SPL13_ORYSJ; Squamosa promoter-binding-like protein 13 | ||||
TrEMBL | I1GU51 | 1e-134 | I1GU51_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G26720.1 | 1e-135 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8524 | 32 | 48 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G53160.2 | 3e-41 | squamosa promoter binding protein-like 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi1g26720.1.p |
Entrez Gene | 100843215 |