PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g26654.1.p
Common NameBRADI_1g26654
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 522aa    MW: 61225.9 Da    PI: 8.6727
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g26654.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.43.7e-211295290
              FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                       Y+ YA++ GF +r ++++k + +gei +   vC + g++e+  k     r+++ ++rtgCkak+++k++  + w vt++  eHnH+l 
  Bradi1g26654.1.p 12 HYKMYARRYGFGIRYDYKRKYEVDGEISRVFIVCHRAGNPEPVVKM----RSRNITERTGCKAKMMIKRR-PDGWLVTEFTDEHNHPLI 95
                      6*****************************************8877....999*****************.888*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-181295IPR004330FAR1 DNA binding domain
PfamPF105512.0E-11217273IPR018289MULE transposase domain
PROSITE profilePS5096610.014386422IPR007527Zinc finger, SWIM-type
PfamPF044346.8E-5386420IPR007527Zinc finger, SWIM-type
SMARTSM005750.0034397424IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MVFDSLKAAE EHYKMYARRY GFGIRYDYKR KYEVDGEISR VFIVCHRAGN PEPVVKMRSR  60
NITERTGCKA KMMIKRRPDG WLVTEFTDEH NHPLIKKWLL TSFLRSHRDI PEEDKQFIRI  120
LHSVNIETSK QMQMMARLYG YLDNLGYTVK DVANYHASIR MEHKYTDMED TMDYFRKLQQ  180
QDKDFYYKYK LDEEFQVQNI FWVDGAARRA YKHYNDCVSF DTTYMTNIYK MSFAPFIGIN  240
NHGQSIQFGC GFLRNELTEM PAYFMQSFYT FLQSTARSEG FNAVLKKYVN PQNSISDFVE  300
QYAALQEKIM RAVSKQEADT AITTTTTWSW HPIEVHMSKV YTRNIYNRFQ EEMQQVMSYN  360
CSQLNSNSFM LVCITRFVPD HGNRSYRVTA DVGEAKYSCK CCKFERDGML CCHILKVMLQ  420
MNVLEMPDAY ILNRWTWDAK EALIDEAAQG GAGRTEMPEE SRRKMKFALI SAQYRNLFKV  480
PCLTDDGQRI AAKQAREMKK ELADLEKGSE NKSSKNGNSI S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g26654.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239385.11e-140protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0Q3JDN10.0A0A0Q3JDN1_BRADI; Uncharacterized protein
STRINGBRADI3G25900.11e-131(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1098224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-45FAR1-related sequence 5