PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g24140.1.p

Common Name

BRADI_1g24140, LOC100843134

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 291aa MW: 31574.7 Da PI: 8.418

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g24140.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.3e-05	263	284	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp+C+k F+++ +L+ H + H Bradi1g24140.1.p 263 CPKCSKGFRDPVLLVEHVEKeH 284 *****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	1.96E-13	6	51	No hit	No description
PROSITE profile	PS51039	7.341	10	59	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	8.7E-10	11	53	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.0064	13	52	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	5.0E-13	13	51	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	1.7E-10	91	151	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	1.75E-9	93	145	No hit	No description
PROSITE profile	PS51039	7.918	98	145	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.0083	101	142	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	3.1E-8	101	140	IPR000058	Zinc finger, AN1-type
SMART	SM00355	0.92	224	247	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	226	247	IPR007087	Zinc finger, C2H2
SMART	SM00355	9.3	261	284	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.767	261	289	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	263	284	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MGTPEFPDLG KHCSVGDCNQ IDFLPFTCDR CDHVFCLQHR SYTSHKCLNA NKKDVTVLIC 60 PLCAKGVRLN PNEDANITWD SHVNTDCDPS NYQKATKKKK CPVPGCREAL TFSNTIRCKD 120 CSNEHCLKHR FGPDHKCPGP RKLEPTFPFS NMLRRSQKVQ PRTSSSSSSG SSSWWSSSLL 180 NAASSLRSSA EAGMQKLSIA TSEAVQMAKD GITPNSASSS GLVEQCVQCP AKFSTVGALI 240 EHAEKSHGNN SQSSRGKVTI DACPKCSKGF RDPVLLVEHV EKEHGGTSKA *

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00306	DAP	Transfer from AT2G41835	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g24140.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK251347	0.0	AK251347.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf113d20, mRNA sequence.
GenBank	AK360983	0.0	AK360983.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1130A19.
GenBank	AK367174	0.0	AK367174.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2052H13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003562919.1	0.0	zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
Swissprot	Q0D5B9	1e-164	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	I1GT94	0.0	I1GT94_BRADI; Uncharacterized protein
STRING	BRADI1G24140.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4763	33	42
Representative plant	OGRP1909	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-119	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Bradi1g24140.1.p
Entrez Gene	100843134

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]