PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g23756.1.p
Common NameBRADI_1g23756, LOC100821055
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 294aa    MW: 31491.3 Da    PI: 7.4644
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g23756.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.3e-1850100155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae Aa+a+++a++ l+g
  Bradi1g23756.1.p  50 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAARAYDEAARLLRG 100
                       79********.7*********32...35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.08E-1750108No hitNo description
SuperFamilySSF541712.29E-1950109IPR016177DNA-binding domain
PfamPF008472.7E-1250100IPR001471AP2/ERF domain
SMARTSM003802.6E-3451114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-2851108IPR001471AP2/ERF domain
PROSITE profilePS5103220.15251108IPR001471AP2/ERF domain
PRINTSPR003673.2E-75263IPR001471AP2/ERF domain
PRINTSPR003673.2E-77490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MELHFQVQPP VLQLQDYCYY YHQQEAIAAT AQAAKPTKPR GRKKGGSSHS KFVGVRQRPS  60
GRWVAEIKDT TQKIRMWLGT FETAEAAARA YDEAARLLRG AEARTNFAPR ISPDCPLALR  120
IRGLLHHKKL KKARAPAAST KIPSSSPPAA PTSNSNSNSN SGSSSTSSSS SGVSCEEGAV  180
KQAVVDAGEV YRPDFVSEEL EPWMFEPAAL GGGQFTELDA FVAVDGGCAA ASAAGEESTP  240
TAAAGGMAEF ERMKVERRIS ASLYAMNGLQ EYFDKVFDAS ACDPLWDLSP LCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1446107971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g23756.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3741061e-144AK374106.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3054G17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751948.10.0ethylene-responsive transcription factor RAP2-11
TrEMBLA0A0Q3JU150.0A0A0Q3JU15_BRADI; Uncharacterized protein
STRINGBRADI1G23756.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-18related to AP2 11