PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g23470.1.p
Common NameBRADI_1g23470, LOC100839795
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 799aa    MW: 85262 Da    PI: 5.8897
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g23470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-056890123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ Cgk F r  nL+ H r H
  Bradi1g23470.1.p 68 FVCEVCGKGFQRDQNLQLHRRGH 90
                      89******************988 PP
2zf-C2H215.54.8e-05147168223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        Cp Cgk++  + +Lk H +t+
  Bradi1g23470.1.p 147 ACPRCGKRYAVQADLKAHAKTC 168
                       6******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-86790No hitNo description
Gene3DG3DSA:3.30.160.601.8E-56890IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0146890IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6356890IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM0035585111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-5134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.39E-8141166No hitNo description
SMARTSM0035590146166IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663146174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MVDKGELRKA GELMGTAAAP DRAEMPPNPT EPPAPAPAKK KRNLPGTPDP DAEVIALSPG  60
TLMATNRFVC EVCGKGFQRD QNLQLHRRGH NLPWRLRQRG PGAAPPRRRV YVCPEPGCVH  120
HSPARALGDL TGIKKHFCRK HGEKRWACPR CGKRYAVQAD LKAHAKTCGT REYRCDCGTL  180
FTRRDSFVTH RAFCGALVEE TGRALTVPAP PSPRPPDLVE VEENVVKDKE KGEENVDRDK  240
ETEDEEKGGE EDNGTSAVAE VDEPQCVEAA TEEPQRSPSP PSPPPQEQQP VAVVPNVDET  300
EVVAESIMDV KQEEEDKGDE DVCFHEADQY DGTELEDSNL PDKDNDTPML PCFLPAPSDA  360
IGTDGRGTSC GSISSASNSI APATTTSTFA GLFASATTSA TPQSRSLRDL IGVDPTFLCL  420
AIGAPSFPQT NASNPGSFAP PPAPHMSATA LLQKAAEVGA SQSSSSFLKE FGLASSSTST  480
PSRPPQRSID GPTQCQLPQG RFTENSTHSK LSQGSFMDNS PPSQQHQGRP QGRFFDNSIP  540
SNPPQGRFCH NSPPSNLPQG RFLGNSSPSN LPQGRFLGNS PPSDLPQGRF FGNSPPSNLS  600
QGRFVEYSPS SKLMPGQFIS NPTLAKLPQG RYIDSSPLPN LPQGGYVDSS PPSKVPQGGY  660
VDSSPPSKVP HGRYIDNSPP CKQSQGMFVD NSAQQWHHRS NQLMDMEPRP MLSGSLGLGL  720
AYNGANPGLP DLMMGQSPLF GPKPATLDFL GLGIGGTMGG STANGGLPAL MVGGELDMGS  780
VQAPWEEAKR NTNGRTIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-29142203364Zinc finger protein JACKDAW
5b3h_F2e-29142203364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g23470.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574170.0AK357417.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052O01.
GenBankAK3621750.0AK362175.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2003A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562821.20.0protein indeterminate-domain 1
TrEMBLI1GT030.0I1GT03_BRADI; Uncharacterized protein
STRINGBRADI1G23470.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.13e-89C2H2 family protein