PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g23460.1.p | ||||||||
Common Name | BRADI_1g23460, LOC100839491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 234aa MW: 25893.2 Da PI: 7.3635 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.6 | 5.2e-19 | 56 | 109 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+e Le F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k Bradi1g23460.1.p 56 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 109 45589***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 116.9 | 1.2e-37 | 56 | 145 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrls+eqv++LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da ++++Le+ev +L+e+l Bradi1g23460.1.p 56 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKHAHDAAILHKCHLENEVLRLKERL 145 9**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 4.9E-17 | 54 | 115 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.7E-16 | 56 | 109 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.37E-16 | 56 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.001 | 56 | 111 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.87E-16 | 56 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-18 | 56 | 109 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 82 | 91 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 91 | 107 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDKQELFASS YMGTSFLGAN GTAAVQGERP RARRRRRRAA AARCEDVDGG LLLDPKKRRL 60 SDEQVEMLEL SFREERKLET GRKVHLAAEL GLDPKQVAVW FQNRRARHKS KLLEEEFAKL 120 KHAHDAAILH KCHLENEVLR LKERLGVIEE EVTRLRSAGS CHATSGDGAG HHGSPSSSFS 180 TGTCHHQQQP GFTGGADVML GNDDLMMYVP DAEYGGAYAD TSVAEWFSLY GLM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 37 | RPRARRRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g23460.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121889 | 1e-136 | AK121889.1 Oryza sativa Japonica Group cDNA clone:J033105B17, full insert sequence. | |||
GenBank | AY559047 | 1e-136 | AY559047.1 Oryza sativa (japonica cultivar-group) homeodomain leucine zipper protein 14 (hox14) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562820.1 | 1e-173 | homeobox-leucine zipper protein HOX14 | ||||
Swissprot | Q7XI85 | 5e-84 | HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14 | ||||
TrEMBL | I1GT02 | 1e-171 | I1GT02_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G23460.1 | 1e-172 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 | Representative plant | OGRP3776 | 10 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-39 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g23460.1.p |
Entrez Gene | 100839491 |
Publications ? help Back to Top | |||
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