PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g23297.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 652aa    MW: 75714.4 Da    PI: 7.4459
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g23297.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.59.4e-2325117191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                       +fYn+YA e GFsv+ks+ +  + ++ei+ r+fv s+eg+ree++ k ++++rr+r+ tr+gC+akl++ + k +++w v+++  eH+H+lap
  Bradi1g23297.1.p  25 EFYNSYALEKGFSVQKSYVEWDEAKEEIILRKFVYSREGSREEKNMKrEDRKRRPRNLTRVGCRAKLVIARVKeTARWFVKDFIDEHTHPLAP 117
                       6****************************************9998875788999****************99989***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.0E-2125117IPR004330FAR1 DNA binding domain
PfamPF105512.2E-35238332IPR018289MULE transposase domain
PROSITE profilePS5096610.373516555IPR007527Zinc finger, SWIM-type
SMARTSM005750.0085530557IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MVDESIDEYL DIVERKFGSE DDGFEFYNSY ALEKGFSVQK SYVEWDEAKE EIILRKFVYS  60
REGSREEKNM KREDRKRRPR NLTRVGCRAK LVIARVKETA RWFVKDFIDE HTHPLAPRDL  120
ACLLRSHRRI SDEQQADNVE MEISGLRKHK IMDILVMQYG GYDEVGCTTR DIYNFCHLYK  180
QETVTAGDAQ MVICHMMARQ ERDPNFFFKY LVDGEGHLKG LFWADSQSRL DYEVFGDVVV  240
FDSTYKTNKY NLPFVPFVGL NHHRSTIIFG CGIISHETSE SYEWMLRTFS AAMAQKHPIS  300
VITDGDLAMQ RAIRVVWPDT IHRLCVWHIQ QNIVRHLGDD LVKEEFRSFI YDRSPIEEHE  360
KKWLDFLERS KVTSEESWLH QIYQMRKLWC APYLVGHCFL GLSSNQRSES LNSVLHTHLD  420
GIMTLFKMLE HYERCLSTRR LNESILDIVA LQSVPFTEVD ASSLEKHAAQ VFTPAMFALV  480
RWSTNAASNC TMIEILDADN LSTYVVAKKD RREKKFQVHC EVKEGSLDRI SCSCRKLECL  540
GTPCSHILYV LGILQEERLS KCCVPTRWTM SAKAAFPKTR KNNMYDYSVS LKRYRELRNL  600
SHAACFLASQ SVEAYDRLKL VLNVQADNKK SSSGHKKMHE VWSSAATNDA S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378DRKRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g23297.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314638.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K2DKR40.0A0A2K2DKR4_BRADI; Uncharacterized protein
STRINGBRADI2G37795.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-100FAR1-related sequence 5