PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g22940.1.p | ||||||||
Common Name | BRADI_1g22940, LOC100837436 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 245aa MW: 24019.9 Da PI: 8.4807 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0014 | 102 | 124 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk++ + L H +H Bradi1g22940.1.p 102 YECSVCGKVYASYQALGGHKTSH 124 99********9999998887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.78E-8 | 100 | 176 | No hit | No description |
SMART | SM00355 | 0.04 | 102 | 124 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.014 | 102 | 129 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.0E-13 | 102 | 126 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 104 | 124 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.8E-12 | 153 | 178 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.5 | 154 | 176 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.203 | 154 | 176 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 156 | 176 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDPSAAVSVL SIVEEAASRG KSPVPPPPSP PRMDSWGARG GRGSRRRGPG SGSGSLGGGG 60 AESEEEYLAL CLLMLARGVR GDGDGDVKGA GAAAGAAATK GYECSVCGKV YASYQALGGH 120 KTSHRKPPAP APAASEEASG GAAVAAAAAE AKVHRCSLCL RTFPSGQALG GHKRLHYEGG 180 SAAGDGTKEG AGVKAKAAAA LLRDFDLNLP AAAPSTTAGG DDAEAESAPP EAKRARLQVL 240 LAAV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g22940.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560019.1 | 1e-168 | zinc finger protein 36 | ||||
TrEMBL | I1GSU7 | 1e-166 | I1GSU7_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G22940.1 | 1e-167 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10028 | 23 | 35 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 3e-25 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g22940.1.p |
Entrez Gene | 100837436 |