PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g22680.2.p
Common NameBRADI_1g22680, LOC100822514
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 448aa    MW: 49031.3 Da    PI: 6.5056
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g22680.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.74.9e-28177232259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgynWrKYGqK vkg ++prsYY+Ct  +Cpv+k+ve+s+ d+k+++i+Y+g+H he
  Bradi1g22680.2.p 177 DDGYNWRKYGQKAVKGGRYPRSYYKCTL-NCPVRKNVEHSE-DGKIIKIIYRGQHSHE 232
                       8*************************97.7**********9.***************8 PP
2WRKY100.41.1e-31341399159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+v+g+++prsYY+Ct++gC vkk++ers+++p++v++tYeg+H h+
  Bradi1g22680.2.p 341 LDDGYRWRKYGQKVVRGNPHPRSYYKCTYQGCDVKKHIERSSQEPHAVITTYEGKHVHD 399
                       59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-25173234IPR003657WRKY domain
SuperFamilySSF1182905.49E-22175234IPR003657WRKY domain
SMARTSM007742.2E-29176233IPR003657WRKY domain
PROSITE profilePS5081121.631177234IPR003657WRKY domain
PfamPF031068.3E-23177231IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-34328401IPR003657WRKY domain
SuperFamilySSF1182905.23E-28334401IPR003657WRKY domain
PROSITE profilePS5081135.335336401IPR003657WRKY domain
SMARTSM007743.0E-36341400IPR003657WRKY domain
PfamPF031064.8E-24342398IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MAAEQWSGGG GGLWAPPSAA MESLFPDEPA PAAAVLGIFG AWGLQAQLHS LPPLCAAALL  60
GYPQDNFDMF HAQDLAQLAA QVAQKAELEE THSGELNPKI TPQIAYTKYS ILDQAHNSSF  120
SSATSAQTSQ HVSSSVIAPS MWCIPTLPSH TECIKTESNR VSQVLQGASI TLDRPADDGY  180
NWRKYGQKAV KGGRYPRSYY KCTLNCPVRK NVEHSEDGKI IKIIYRGQHS HERPSKRYKD  240
CGILLKESDD FNDTEDASTK SQLDCLGYDG KPVTSIGTMA DYSLPMREGG DEKVSGTSDY  300
RGEGDDETRT ADEAVGDTDA NERNAPGQKI IVSTTSDVDL LDDGYRWRKY GQKVVRGNPH  360
PRSYYKCTYQ GCDVKKHIER SSQEPHAVIT TYEGKHVHDV PGSRNRSHAA GQPYCTEQTY  420
SEQSSASFCS RSEKGKYSAV SLKHVAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-33177401878Probable WRKY transcription factor 4
2lex_A3e-33177401878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g22680.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562765.10.0probable WRKY transcription factor 3 isoform X1
TrEMBLI1GSR70.0I1GSR7_BRADI; Uncharacterized protein
STRINGBRADI1G22680.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-72WRKY DNA-binding protein 3