PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g22560.1.p
Common NameBRADI_1g22560
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 425aa    MW: 44822.7 Da    PI: 6.5852
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g22560.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000181739123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ Cgk Fs   +L  H+r+H
  Bradi1g22560.1.p 17 HTCKVCGKGFSGGRSLGGHMRSH 39
                      79*******************99 PP
2zf-C2H220.31.5e-0698119323
                       ETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                       C  Cgk Fs++ +L rH+r+ H
  Bradi1g22560.1.p  98 CRECGKLFSSWRSLFRHLRRdH 119
                       ********************99 PP
3zf-C2H215.26.2e-05304326123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+Cp Cg++Fs+   L  H  +H
  Bradi1g22560.1.p 304 YECPGCGRVFSSYQALGGHRASH 326
                       99***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.8E-61639IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-41739IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0231739IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8241744IPR007087Zinc finger, C2H2
SuperFamilySSF576676.0E-91739No hitNo description
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
SuperFamilySSF576676.0E-991116No hitNo description
PfamPF139120.0496119IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.63596124IPR007087Zinc finger, C2H2
SMARTSM003550.02496119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
PfamPF139122.5E-11303328IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.429304331IPR007087Zinc finger, C2H2
SMARTSM003550.054304326IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280306326IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDELAAGGGA GMRMMTHTCK VCGKGFSGGR SLGGHMRSHI SHGEAVPAVE AGGSNGGGGG  60
GGAYGLRENP KKTRRLSDFA AEEGEDGDGG GGGQYRACRE CGKLFSSWRS LFRHLRRDHD  120
GDGEEEEDDV DDQLGEEEFF AEEEAEVEPP VLSPAVMAAP PRRRRRSMRV AAPAPAPPPP  180
PPPLVDSFEK EQEDVALCLL MLSRDTAAPA PPQKEEPTPP PPLENYHKKK TPPKPKPKQV  240
SYLPRNAYNS DDDSPAPLQY GDGKIIKSTT KKRRSSGGGH YYAAPNSSSS PKQQQPPPPK  300
RTRYECPGCG RVFSSYQALG GHRASHKRIN TNCSAPKPTA PAAAAPEPSV ETAYTASSFS  360
TPSPSASVAT IGAASGARKK TALAVEEKLA CELYYGGGAG AEQDEHVAEL DLNFPPAPSS  420
EDAP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g22560.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752079.20.0zinc finger protein ZAT1-like
TrEMBLA0A0Q3GY160.0A0A0Q3GY16_BRADI; Uncharacterized protein
STRINGBRADI1G22560.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Representative plantOGRP1267644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.15e-08C2H2-like zinc finger protein