PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g22431.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 691aa    MW: 80327.4 Da    PI: 9.0268
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g22431.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.31.2e-1822113289
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                        Y +YA+  GF +r+++++   ++ge+ +++fvC+  g++++e+++       + +r+++ ++rt+C+a++kvk++  +++  +++e+eHnH+
  Bradi1g22431.2.p  22 HYLDYARWNGFGIRIDYQRPI-KSGETSRAQFVCYLAGRNKKEREDphrpesVVPKRKRNITERTSCHARMKVKLD-GATYTAEQFEEEHNHN 112
                       699*************99988.7888*****************9999**9999999********************.9**************8 PP

              FAR1  89 l 89 
                       +
  Bradi1g22431.2.p 113 V 113
                       7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-1522114IPR004330FAR1 DNA binding domain
PfamPF105514.2E-31236330IPR018289MULE transposase domain
PROSITE profilePS509668.902518554IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-4528551IPR007527Zinc finger, SWIM-type
SMARTSM005759.7E-4529556IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MSAPVKPTVG MRFDSIASAK KHYLDYARWN GFGIRIDYQR PIKSGETSRA QFVCYLAGRN  60
KKEREDPHRP ESVVPKRKRN ITERTSCHAR MKVKLDGATY TAEQFEEEHN HNVLKKFDLG  120
KYLRSHRHMP REEREFVKLL HACNLRTSQM MQILSTLHGK LNNLSYTRTN MANFRAALRR  180
EHCLMDMKYT LRYFKKLKKE DDDFFYSFEL DNEDRVINLY WIDVEARRSY KYYNDCISFD  240
ITYLTNKYNM PCVPFIGVNN HCQSVQFGCG FLRNEDTLSF IWLFNTFLEA MDGIAPANIT  300
TDQDFAMRNT ILEVFPETRH RNCRWHIMKK AQEKMGGFMG RNLERHADFE DCINNSFTPA  360
EFELKWGAMI EKYQVQDNED LSSLWENRTS WVPAYFMLSF YPFLQSTQRS EGFNAVLKRY  420
VSPSNSIYDF AQQYSALQEK ILGVERQAEA ETALTVPKKW GFSPIEEQVK LVYTRRMFNR  480
FQEKLQMTSS YHCARTGQNT FEAISMTCHS GQYDARTFRL AADIEAGMYS CECCKFDRDG  540
IVCCHILRVM QQEGVRVLPQ HYILKRWTWN ADAALGLHGT QQLNPAQQEM PENSRKLMRY  600
ATMKRGFGDI AKEACDDQDA VRIVERHMKA MRSEMASLRK RQEKDARAKE AIGLSRRQGV  660
VPQGSASGAA QEGSTSRGGG GRRVCDKGCN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g22431.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312803.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0Q3JTJ90.0A0A0Q3JTJ9_BRADI; Uncharacterized protein
STRINGPavir.Eb03348.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-100FAR1-related sequence 5