PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g21980.4.p | ||||||||
Common Name | BRADI_1g21980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 254aa MW: 29188 Da PI: 9.0364 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.9 | 1e-31 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+nrqvtfskRrng+lKKA+E+SvLCdaeva+i+fs++gklyeyss Bradi1g21980.4.p 10 RIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVALIVFSTKGKLYEYSS 59 8***********************************************96 PP | |||||||
2 | K-box | 92.3 | 8.4e-31 | 89 | 173 | 14 | 98 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ e+ +Lk +++ Lq++qR+llGe+Le+L+ +eLqqLeqqL++slk+iRs+Kn+ll+++i+elqkkek+l+++n L+k l Bradi1g21980.4.p 89 QANWGDEYGRLKIKLDALQKSQRQLLGEQLEPLTTRELQQLEQQLDSSLKHIRSRKNQLLFDSISELQKKEKSLKDQNGVLQKHL 173 6899*****************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.394 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.5E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.09E-41 | 2 | 75 | No hit | No description |
SuperFamily | SSF55455 | 4.32E-32 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.0E-28 | 88 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.982 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGRGPVQLRR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVALIVFST KGKLYEYSSQ 60 DSSMDVILER YQRYSFEERA VLDPNIGDQA NWGDEYGRLK IKLDALQKSQ RQLLGEQLEP 120 LTTRELQQLE QQLDSSLKHI RSRKNQLLFD SISELQKKEK SLKDQNGVLQ KHLVETEKEK 180 NNALSNIQHR EQLNEKNTAL PNTHDREQQN GATTSSPSPT PLTVLDSMPN LNIGYYASHI 240 HCIDVCSRMY RQI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-22 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 3e-22 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 3e-22 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 3e-22 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot. {ECO:0000269|PubMed:11971906, ECO:0000269|PubMed:15299121}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g21980.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469300 | 0.0 | KF469300.1 Brachypodium distachyon MADS-box transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001289795.1 | 0.0 | MADS-box transcription factor 18 | ||||
Swissprot | A2YNI2 | 1e-115 | MAD18_ORYSI; MADS-box transcription factor 18 | ||||
Swissprot | Q0D4T4 | 1e-115 | MAD18_ORYSJ; MADS-box transcription factor 18 | ||||
TrEMBL | I1GSJ2 | 0.0 | I1GSJ2_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G21980.2 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 3e-69 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g21980.4.p |