PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi1g21980.3.p | ||||||||
Common Name | BRADI_1g21980, LOC100836119 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 271aa MW: 30741.6 Da PI: 9.5505 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.7 | 1.1e-31 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+nrqvtfskRrng+lKKA+E+SvLCdaeva+i+fs++gklyeyss Bradi1g21980.3.p 10 RIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVALIVFSTKGKLYEYSS 59 8***********************************************96 PP | |||||||
2 | K-box | 92.4 | 7.6e-31 | 89 | 173 | 14 | 98 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ e+ +Lk +++ Lq++qR+llGe+Le+L+ +eLqqLeqqL++slk+iRs+Kn+ll+++i+elqkkek+l+++n L+k l Bradi1g21980.3.p 89 QANWGDEYGRLKIKLDALQKSQRQLLGEQLEPLTTRELQQLEQQLDSSLKHIRSRKNQLLFDSISELQKKEKSLKDQNGVLQKHL 173 6899*****************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.394 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.5E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.97E-32 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.63E-42 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 4.6E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.2E-28 | 88 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.982 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 271 aa Download sequence Send to blast |
MGRGPVQLRR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVALIVFST KGKLYEYSSQ 60 DSSMDVILER YQRYSFEERA VLDPNIGDQA NWGDEYGRLK IKLDALQKSQ RQLLGEQLEP 120 LTTRELQQLE QQLDSSLKHI RSRKNQLLFD SISELQKKEK SLKDQNGVLQ KHLVETEKEK 180 NNALSNIQHR EQLNEKNTAL PNTHDREQQN GATTSSPSPT PLTVLDSMPN LNIGSHQPRE 240 AGGEPESQPS PAQANSGKLP PWMLRTISNR * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 9e-23 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 9e-23 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 9e-23 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 9e-23 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 1e-22 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 1e-22 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 1e-22 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 1e-22 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot. {ECO:0000269|PubMed:11971906, ECO:0000269|PubMed:15299121}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi1g21980.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF469300 | 0.0 | KF469300.1 Brachypodium distachyon MADS-box transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001289795.1 | 1e-169 | MADS-box transcription factor 18 | ||||
Swissprot | A2YNI2 | 1e-130 | MAD18_ORYSI; MADS-box transcription factor 18 | ||||
Swissprot | Q0D4T4 | 1e-130 | MAD18_ORYSJ; MADS-box transcription factor 18 | ||||
TrEMBL | I1GSJ1 | 0.0 | I1GSJ1_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G21980.2 | 1e-168 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-69 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi1g21980.3.p |
Entrez Gene | 100836119 |