PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g21115.1.p
Common NameBRADI_1g21115
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 760aa    MW: 85877.1 Da    PI: 10.0675
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g21115.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.95.4e-26223315191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                       +fYn+YA e GFsvrks+ +  + n+ei+  +fvCs+eg+ree++ k ++++rr+r+ tr+gC+akl++ + k +g+w v+++  eH+H+lap
  Bradi1g21115.1.p 223 EFYNSYALEKGFSVRKSYVEWDEANEEIILTKFVCSREGSREEKHMKrEDRKRRPRNLTRVGCRAKLVIARVKkTGRWFVKDFIDEHTHPLAP 315
                       6*****************************************999886788999***************99998****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-24223315IPR004330FAR1 DNA binding domain
PfamPF105517.0E-34436530IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MAEDKSSIWS PIRWQRTTTP TVRPGTGEKS TDTIGLAKSL ASIQMTPKVV GAPKIWRDSP  60
AYPSPTYSPA KLCIARSTPS TSCRRRLLPR PPRAAAVSSP WAGAPPPTCS PRAAAVSPPP  120
ATDASPPPAA RTTLAARSAR TGAAARSPRA AATCSARVAA HVPPGRIRAA DNHPRPDPVA  180
PASSSVASSC PGRRHRRDMV DESIDEYLDI VERTFGSEDD GFEFYNSYAL EKGFSVRKSY  240
VEWDEANEEI ILTKFVCSRE GSREEKHMKR EDRKRRPRNL TRVGCRAKLV IARVKKTGRW  300
FVKDFIDEHT HPLAPRDLAC LLRSHRRISD EQKADIVEME ISGLRKHKIM DIMVMQYGGY  360
DEVGCTTRDI YNFCHLYKHE TVAAADAQTV IRHMMARQER DPIFFFKYLV DGEGHLKGLF  420
WADSQSRLDY EVFGDVVVFD STYRTNKYNL PFVPFVGLNH HRSTVFFGCG IISHETSKSY  480
EWMVRTFSAA MAQKHPISVI TDGDLAMQRV IRVVWPDTIH RLCIWHIQQN ISVPFTEVDA  540
SSLEKHAAQV FTPAMFALVR WSTNAASNCT KIEILDADNL STYVVAKKDR REKKFQVHSE  600
ERRFFGQDFL FLPWMMSAKA AFPTTRKNNM YDYSVSLKRY RELRNLSHAA CFLASQSVEA  660
YDRLKLVLNV QPDNKKSSGG HKECMRYGPV LPQTARVDSG DLEKILDPVH VQGRGAPKKR  720
LKPRKRKRST VKCGYCRQEG HNRRKCSKWE EDKKLASVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18390RRRLLPRP
2271276DRKRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g21115.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179040.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0Q3RQA30.0A0A0Q3RQA3_BRADI; Uncharacterized protein
STRINGBRADI2G37795.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-67FAR1-related sequence 5