PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g20801.1.p
Common NameBRADI_1g20801, LOC100829344
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 298aa    MW: 34001.4 Da    PI: 6.3485
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g20801.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1645.5e-51121401128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       l+pGfrFhPtdeel+ +yL++kv++k++ + ++i evd++k++Pw++p k ++ ++e++wyf++++d+ky+tg+ +nr+tk+gyWk +gkdke
  Bradi1g20801.1.p  12 LAPGFRFHPTDEELIRFYLNPKVKDKSFCT-TAIGEVDMNKYDPWEFPtKaNMVGQENKWYFYCQKDRKYPTGRMTNRTTKAGYWKGSGKDKE 103
                       579************************988.78**************95245556889*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ +g lvg+kktL+fy+grap+gekt+Wvmheyr 
  Bradi1g20801.1.p 104 IYHGHGLLVGMKKTLIFYRGRAPNGEKTNWVMHEYRT 140
                       ***9*******************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-557165IPR003441NAC domain
PROSITE profilePS5100555.08412165IPR003441NAC domain
PfamPF023657.2E-2714139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGDHLHQQQL DLAPGFRFHP TDEELIRFYL NPKVKDKSFC TTAIGEVDMN KYDPWEFPTK  60
ANMVGQENKW YFYCQKDRKY PTGRMTNRTT KAGYWKGSGK DKEIYHGHGL LVGMKKTLIF  120
YRGRAPNGEK TNWVMHEYRT IETTSDNKMP SNSKSEWVVC RIYHKSSGIK KEEVPSYPMD  180
PINNEHISMP MSMPMGNQQD GFDSETAIST IQLPPLMDHF SMYQLDGSVG SSTSGNNQAP  240
MPFYQQHMQM PITADEGYMV APVSGPSSMM SQDDTEAATA DEFPFVFQRG MEGMWIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-49917117174NAC domain-containing protein 19
3swm_B3e-49917117174NAC domain-containing protein 19
3swm_C3e-49917117174NAC domain-containing protein 19
3swm_D3e-49917117174NAC domain-containing protein 19
3swp_A3e-49917117174NAC domain-containing protein 19
3swp_B3e-49917117174NAC domain-containing protein 19
3swp_C3e-49917117174NAC domain-containing protein 19
3swp_D3e-49917117174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g20801.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312743.10.0NAC domain-containing protein 92
SwissprotQ9FLJ22e-71NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0Q3KVA00.0A0A0Q3KVA0_BRADI; Uncharacterized protein
STRINGTraes_7AL_38B48B7B2.24e-85(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.16e-74NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]