PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g20586.3.p | ||||||||
Common Name | BRADI_1g20586, LOC100835080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 560aa MW: 60970.8 Da PI: 4.567 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.5 | 1.5e-08 | 2 | 35 | 11 | 46 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ll +a k+lG++ W+ Ia+ + gRt++ +k+r+ + Bradi1g20586.3.p 2 LLCEAQKLLGNK-WTEIAKVVS-GRTDNAVKNRFST 35 6899********.*********.**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.694 | 1 | 41 | IPR017930 | Myb domain |
CDD | cd00167 | 4.48E-5 | 2 | 36 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.0E-10 | 2 | 40 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.49E-8 | 2 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-6 | 2 | 35 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MLLCEAQKLL GNKWTEIAKV VSGRTDNAVK NRFSTLCKRR SKDDELVEEN GSLCSNENAK 60 RVLTQTGDLT SSIPGSSLSI KQMRSRKPDF KENMAPNMRS FGQEKSIQQH SRQPLANISP 120 NNQHNVNIVG TQNDFAKDST MQLHGNGQTC VKNEGNFLKS NDPKFATLLQ QADLLSSLAT 180 KLNTENTSQS MDEAWQQLQH HLVKKEDNEM LESSISGTAS LLEELDDLIV DPYENEEEDE 240 RKEQNEQTDV SSKHSNGPLE TSMQVTSQMA LDMEIDICPI DKSTPDNSLC GNFLSSTPGV 300 EITASVNLGE AAEDSGLYCM EYSSPAHAVL QAKADAEIPA AKILSEAAEG SWSQFMEYTS 360 PAQTVVHAKA DAEIPVSISL SEAAEGSWHQ RMEYMSPAHT LLRAKADAEI PASVNSSEAA 420 KDCSLQCTEY TSPAHTDLRA ADVEILDTSS EIAQDCSLKC IKFTSPAHTA IEGKAEAKMP 480 ALENCSEVPK DSSTQPGMEF TSPAHTVPTF QRYTDDVPTP KITASERNFL LSVLGLTSPG 540 SKPDTSQQPS CKRALLNSL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00259 | DAP | Transfer from AT2G02820 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g20586.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014751826.1 | 0.0 | transcription factor MYB124 isoform X2 | ||||
TrEMBL | A0A2K2DK97 | 0.0 | A0A2K2DK97_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G20586.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02820.2 | 4e-34 | myb domain protein 88 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g20586.3.p |
Entrez Gene | 100835080 |