PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi1g20586.2.p | ||||||||
Common Name | BRADI_1g20586, LOC100835080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 651aa MW: 71061.9 Da PI: 4.7305 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.5 | 3.6e-14 | 31 | 75 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++eEd+ l ++ +G+++W+ Ia ++ +t+ qc+ rw++yl Bradi1g20586.2.p 31 SWSAEEDDVLRAQIAHHGTDNWTIIATQFN-DKTARQCRRRWYNYL 75 6*****************************.**************7 PP | |||||||
2 | Myb_DNA-binding | 41.4 | 3.4e-13 | 81 | 124 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W+ eEd ll +a k+lG++ W+ Ia+ + gRt++ +k+r+ + Bradi1g20586.2.p 81 KGGWSREEDMLLCEAQKLLGNK-WTEIAKVVS-GRTDNAVKNRFST 124 688*******************.*********.**********976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.549 | 24 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.73E-27 | 28 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-13 | 28 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.28E-13 | 31 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-19 | 32 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 9.9E-16 | 32 | 92 | No hit | No description |
PROSITE profile | PS51294 | 16.914 | 80 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-13 | 80 | 128 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-19 | 83 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.00E-9 | 84 | 125 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 651 aa Download sequence Send to blast |
MATGPDLTSS SPAAAAAASS VAAKKDRHIV SWSAEEDDVL RAQIAHHGTD NWTIIATQFN 60 DKTARQCRRR WYNYLNTECK KGGWSREEDM LLCEAQKLLG NKWTEIAKVV SGRTDNAVKN 120 RFSTLCKRRS KDDELVEENG SLCSNENAKR VLTQTGDLTS SIPGSSLSIK QMRSRKPDFK 180 ENMAPNMRSF GQEKSIQQHS RQPLANISPN NQHNVNIVGT QNDFAKDSTM QLHGNGQTCV 240 KNEGNFLKSN DPKFATLLQQ ADLLSSLATK LNTENTSQSM DEAWQQLQHH LVKKEDNEML 300 ESSISGTASL LEELDDLIVD PYENEEEDER KSVEQNEQTD VSSKHSNGPL ETSMQVTSQM 360 ALDMEIDICP IDKSTPDNSL CGNFLSSTPG VEITASVNLG EAAEDSGLYC MEYSSPAHAV 420 LQAKADAEIP AAKILSEAAE GSWSQFMEYT SPAQTVVHAK ADAEIPVSIS LSEAAEGSWH 480 QRMEYMSPAH TLLRAKADAE IPASVNSSEA AKDCSLQCTE YTSPAHTDLR AADVEILDTS 540 SEIAQDCSLK CIKFTSPAHT AIEGKAEAKM PALENCSEVP KDSSTQPGME FTSPAHTVPT 600 FQRYTDDVPT PKITASERNF LLSVLGLTSP GSKPDTSQQP SCKRALLNSL * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-28 | 32 | 129 | 10 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00259 | DAP | Transfer from AT2G02820 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi1g20586.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235205.1 | 0.0 | transcription factor MYB124 isoform X1 | ||||
TrEMBL | A0A0Q3NDA4 | 0.0 | A0A0Q3NDA4_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G20586.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8903 | 38 | 47 | Representative plant | OGRP5416 | 14 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02820.2 | 1e-73 | myb domain protein 88 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi1g20586.2.p |
Entrez Gene | 100835080 |