PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g20540.1.p | ||||||||
Common Name | BRADI_1g20540, LOC100826913 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 325aa MW: 34345.3 Da PI: 8.1224 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +++ +G+g+W++++ + g++R+ k+c++rw +yl Bradi1g20540.1.p 14 KGPWTPEEDLVLVSYIQDHGPGNWRSVPTRTGLKRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l Bradi1g20540.1.p 67 RGNFTAQEEKLIVHLQALLGNR-WAAIASYLP-DRTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.444 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.67E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.44E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.785 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.22E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MGRPPCCDKD GVKKGPWTPE EDLVLVSYIQ DHGPGNWRSV PTRTGLKRCS KSCRLRWTNY 60 LRPGIKRGNF TAQEEKLIVH LQALLGNRWA AIASYLPDRT DNDIKNYWNT HLRRKLQLQA 120 DGVSPSSSKP ATAANKSSSS AAASTKGQWE RRLQTDIGLA RRALREALTA IRDGDEEEDD 180 DIKPQAASGE SPAASSSSGA SMSISMSQPT PYVLTADNVA RMLDGWSKSS KGRAAAADSP 240 PSSGSSASEL SCGGAAASEC VRKPAVSAPA PEQPSELSAI ETWLFADDVS NAVGFLGHGH 300 GYGGGLLDGP NPGLLGGGLL DGRF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-27 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-27 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-27 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g20540.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559924.2 | 0.0 | transcription factor MYB94 | ||||
Swissprot | Q9SN78 | 2e-93 | MYB94_ARATH; Transcription factor MYB94 | ||||
TrEMBL | I1GS26 | 0.0 | I1GS26_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G20540.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62470.2 | 3e-83 | myb domain protein 96 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g20540.1.p |
Entrez Gene | 100826913 |
Publications ? help Back to Top | |||
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