PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g20250.2.p | ||||||||
Common Name | BRADI_1g20250, LOC100822592 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 322aa MW: 33289.2 Da PI: 6.7657 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.9e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++++G+g+W+++++ g+ R++k+c++rw +yl Bradi1g20250.2.p 16 RGLWSPEEDEKLLNHIAKFGNGCWSSVPKIAGLERCGKSCRLRWINYL 63 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E+el++ ++ +lG++ W+ Ia+ ++ gRt++++k++w+++l Bradi1g20250.2.p 69 RGAFSQQEEELIISLHSLLGNK-WSQIAAQLP-GRTDNEVKNFWNSFL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.566 | 11 | 63 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 11 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.49E-29 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.57E-12 | 19 | 63 | No hit | No description |
PROSITE profile | PS51294 | 26.152 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-26 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-15 | 69 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.53E-11 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MAKRPAGGGT KKRLRRGLWS PEEDEKLLNH IAKFGNGCWS SVPKIAGLER CGKSCRLRWI 60 NYLRPDLKRG AFSQQEEELI ISLHSLLGNK WSQIAAQLPG RTDNEVKNFW NSFLKKKLRA 120 RGIDPATHKP LVSNLSPAPV FSDAAAELGL PASMAPPPPM PPLGVASAAA ESACCYVYGG 180 SSDCGGGGHG FMIPSVSSSS TLSSMAAGGA AAATEEQYSG GGFESSVTTQ SSGGGGGAQL 240 PWLELGGSIS SYGGAGAGDE EQYGAALDEL RWSDYVFDGG YQDQQCAAAA IYDHGKAGGD 300 PAATAAQSFG AHGGGVSWCL N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-28 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g20250.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353785 | 1e-125 | AK353785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002L23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559914.1 | 0.0 | myb-related protein Hv33 | ||||
TrEMBL | I1GRY5 | 0.0 | I1GRY5_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G20250.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3092 | 33 | 85 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 8e-61 | myb domain protein 86 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g20250.2.p |
Entrez Gene | 100822592 |