PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g19900.2.p
Common NameBRADI_1g19900, LOC100843513
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 304aa    MW: 33600.6 Da    PI: 7.3273
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g19900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124.1e-35261182103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+ye+++d+ +++++sw e++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+ll
  Bradi1g19900.2.p  26 FLSKTYELVDDPCTDHIVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLL 109
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                        +i+r+ks+
  Bradi1g19900.2.p 110 AEIHRRKSS 118
                       ******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.1E-5622115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.07E-3323115IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.4E-3723115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.4E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MVVSMESSAH GGGGGVGGGK AVPAPFLSKT YELVDDPCTD HIVSWGEDEA TFVVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV ADRWEFANEF FRKGAKHLLA EIHRRKSSQP  120
PPPLPHHHHA YHHLHHHHHH LGTAFSPPPP LAAHHHHPMS SYHFQEDPPA PAIGSNNNGG  180
QGSGGEFLAA LSEDNRELRR RNSVLLSELA HMKKLYNDII YFLQNHVAPV SLPTPQTPSN  240
LISGIVHGGA GAAANTNSSC RLMELDEEGE DETASVKLFG VALKRTKRAR RPEERFCDLG  300
SEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-211311517129Heat shock factor protein 1
5d5v_B1e-211311517129Heat shock factor protein 1
5d5v_D1e-211311517129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g19900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0541481e-116BT054148.1 Zea mays full-length cDNA clone ZM_BFb0133K13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559898.10.0heat stress transcription factor B-4b
SwissprotQ7XHZ01e-100HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLI1GRU90.0I1GRU9_BRADI; Uncharacterized protein
STRINGBRADI1G19900.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.17e-84heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]