PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g18871.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | AP2 | ||||||||
Protein Properties | Length: 333aa MW: 35395.2 Da PI: 5.0067 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24 | 1e-07 | 30 | 53 | 32 | 55 |
AP2 32 slgkfgtaeeAakaaiaarkkleg 55 +lg+f+taeeAa+a++aa+ kl+g Bradi1g18871.1.p 30 WLGSFDTAEEAARAHDAAAVKLYG 53 *******************99986 PP | |||||||
2 | AP2 | 32.6 | 2e-10 | 113 | 158 | 4 | 54 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 +GV+ + ++vA+I+dp++ r + +lg+f+taeeAa a+ aa+++l Bradi1g18871.1.p 113 RGVYL--SGCKYVARIWDPVQ---RSKLWLGSFDTAEEAAGAHNAAALRLQ 158 78875..468********765...5***********************986 PP | |||||||
3 | AP2 | 38.9 | 2.1e-12 | 170 | 219 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 sg++GV+ ++ ++ A+I+dp++ r++ +lg+f t+ eAa+a+++a+ +l+g Bradi1g18871.1.p 170 SGFRGVY--PRGSKYIAQIKDPVQ---RTKLRLGTFETPVEAARAYDEAAVRLYG 219 79****6..87889*******765...5************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.47 | 1 | 61 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-9 | 17 | 67 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-10 | 22 | 61 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-14 | 25 | 61 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.26 | 101 | 173 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-7 | 113 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.34E-10 | 113 | 158 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-12 | 121 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-14 | 170 | 227 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.5E-5 | 170 | 219 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.03E-18 | 170 | 228 | No hit | No description |
SMART | SM00380 | 2.3E-19 | 171 | 233 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.341 | 171 | 227 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-18 | 172 | 228 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MPRSGRSSAG CGDGAASTGR RDSMGQTMTW LGSFDTAEEA ARAHDAAAVK LYGDEAKTNF 60 KNPEAFVSVA EEDNEMHPKK KKAPAAGKAI SLEVQGGRKA TTRANSNSRP ASRGVYLSGC 120 KYVARIWDPV QRSKLWLGSF DTAEEAAGAH NAAALRLQAA APTAKTKARS GFRGVYPRGS 180 KYIAQIKDPV QRTKLRLGTF ETPVEAARAY DEAAVRLYGA TAVTNFEEGS TAGTANDGAG 240 AVNEKQPMAA AAASNDGTES SMDPLNDSLD LPSIDFLSDS VIQGGVQLDD FWADLPSAEW 300 QQVEEFLDDM DLTNWKILCN AGFSDAMFEC SK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g18871.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229577.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A0Q3KUJ7 | 0.0 | A0A0Q3KUJ7_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP29168 | 3 | 4 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17490.1 | 4e-12 | ethylene responsive element binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g18871.1.p |