PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi1g18370.31.p | ||||||||
Common Name | BRADI_1g18370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 695aa MW: 75301.2 Da PI: 5.4308 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.2e-05 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F r nL+ H r H Bradi1g18370.31.p 47 FVCEVCGKGFQRDQNLQLHRRGH 69 89*******************88 PP | |||||||
2 | zf-C2H2 | 14 | 0.00014 | 125 | 146 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 Cp Cgk++ + +Lk H + + Bradi1g18370.31.p 125 ACPRCGKRYAVQADLKAHAKAC 146 6*****************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.15E-8 | 46 | 69 | No hit | No description |
SMART | SM00355 | 0.014 | 47 | 69 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.635 | 47 | 69 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 47 | 69 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 89 | 119 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.6E-5 | 112 | 144 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.15E-8 | 119 | 144 | No hit | No description |
PROSITE profile | PS50157 | 8.663 | 124 | 152 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 90 | 124 | 144 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 695 aa Download sequence Send to blast |
MLPNPPEPQP AEATAPAKKK RNLPGTPDPD AEVIALSPGT LMASNRFVCE VCGKGFQRDQ 60 NLQLHRRGHN LPWRLRQPGG AAPRRRRVYV CPDPGCVHHS PARALGDLTG IKKHFCRKHG 120 EKRWACPRCG KRYAVQADLK AHAKACGTRE YRCGCGTLFT SFTTHRSFCG ALGEETSRVL 180 AVPEQPSPRP PDLEELEQNV DKDKENGEDN VDTDQENENE ENSGEEKNDN STVAEVNEPR 240 HAEEEAVMEG SHCILSPPSP LPKEQQPRVE VVPDVDEAQV VVEPIVDVKQ EEEDKPNDDV 300 CFQEAYQYDC DELKDSNLPD DVVPMLPCFL PLRSDAIGTD GSSTSCGTVS SASNSIAPAT 360 TTTSTFAGLF ASATTSTTPQ SRSLRDLIGV DPTFLCLAIG ASSSLFPETS ASNACTFAPP 420 PAPHMSATAL LQKAAEVGAS QSSSSFLKGF GLASSSSSTP SREPQGRSID SSTQSQLPQG 480 FIDNSTPFEQ SPRIFIDNSL PSNLPQGRFF DNTKLSSLPE GKFFDNSPPC NLPQGMSASY 540 SPPSKLPLGQ FIDNSSLPKL PQERHFDSSS LRKLPQGRYI DRLPPSMLPK GRNIGSSPPC 600 NLQQGRFFDD RAQQRHHQSN QLMDMDPEPI LPRSPGLAYN SASPRLPDLM MAQSPLFGPK 660 PVTQDFLGLG IRRTMGDFAT NGGLPALMVG GSYI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-23 | 120 | 179 | 3 | 65 | Zinc finger protein JACKDAW |
5b3h_F | 6e-23 | 120 | 179 | 3 | 65 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi1g18370.31.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014752249.1 | 0.0 | protein indeterminate-domain 1 isoform X2 | ||||
TrEMBL | A0A0Q3GWC4 | 0.0 | A0A0Q3GWC4_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G18370.2 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G03840.1 | 4e-84 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi1g18370.31.p |