PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g18370.24.p | ||||||||
Common Name | BRADI_1g18370, LOC100843512 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 698aa MW: 75728.6 Da PI: 5.5473 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.2e-05 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F r nL+ H r H Bradi1g18370.24.p 47 FVCEVCGKGFQRDQNLQLHRRGH 69 89*******************88 PP | |||||||
2 | zf-C2H2 | 14 | 0.00014 | 125 | 146 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 Cp Cgk++ + +Lk H + + Bradi1g18370.24.p 125 ACPRCGKRYAVQADLKAHAKAC 146 6*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.15E-8 | 46 | 69 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 47 | 69 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.014 | 47 | 69 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.635 | 47 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 89 | 119 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.6E-5 | 112 | 144 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.15E-8 | 119 | 144 | No hit | No description |
SMART | SM00355 | 90 | 124 | 144 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.663 | 124 | 152 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
MLPNPPEPQP AEATAPAKKK RNLPGTPDPD AEVIALSPGT LMASNRFVCE VCGKGFQRDQ 60 NLQLHRRGHN LPWRLRQPGG AAPRRRRVYV CPDPGCVHHS PARALGDLTG IKKHFCRKHG 120 EKRWACPRCG KRYAVQADLK AHAKACGTRE YRCGCGTLFT RRDSFTTHRS FCGALGEETS 180 RVLAVPEQPS PRPPDLEELE QNVDKDKENG EDNVDTDQEN ENEENSGEEK NDNSTVAEVN 240 EPRHAEEEAV MEGSHCILSP PSPLPKEQQP RVEVVPDVDE AQVVVEPIVD VKQEEEDKPN 300 DDVCFQEAYQ YDCDELKDSN LPDDVVPMLP CFLPLRSDAI GTDGSSTSCG TVSSASNSIA 360 PATTTTSTFA GLFASATTST TPQSRSLRDL IGVDPTFLCL AIGASSSLFP ETSASNACTF 420 APPPAPHMSA TALLQKAAEV GASQSSSSFL KGFGLASSSS STPSREPQGR SIDSSTQSQL 480 PQGFIDNSTP FEQSPRIFID NSLPSNLPQG RFFDNTKLSS LPEGKFFDNS PPCNLPQGMS 540 ASYSPPSKLP LGQFIDNSSL PKLPQERHFD SSSLRKLPQG RYIDRLPPSM LPKGRNIGSS 600 PPCNLQQGRF FDDRAQQRHH QSNQLMDMDP EPILPRSPGL AYNSASPRLP DLMMAQSPLF 660 GPKPVTQDFL GLGIRRTMGD FATNGGLPAL MVGGSYI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-26 | 120 | 182 | 3 | 65 | Zinc finger protein JACKDAW |
5b3h_F | 1e-26 | 120 | 182 | 3 | 65 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g18370.24.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014752249.1 | 0.0 | protein indeterminate-domain 1 isoform X2 | ||||
TrEMBL | A0A0Q3KUC6 | 0.0 | A0A0Q3KUC6_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G18370.2 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-88 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g18370.24.p |
Entrez Gene | 100843512 |