PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g18370.18.p
Common NameBRADI_1g18370, LOC100843512
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 720aa    MW: 78179.4 Da    PI: 5.7872
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g18370.18.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-054769123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ Cgk F r  nL+ H r H
  Bradi1g18370.18.p 47 FVCEVCGKGFQRDQNLQLHRRGH 69
                       89******************988 PP
2zf-C2H2140.00015125146223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         Cp Cgk++  + +Lk H + +
  Bradi1g18370.18.p 125 ACPRCGKRYAVQADLKAHAKAC 146
                        6*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.3E-84669No hitNo description
SMARTSM003550.0144769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6354769IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-54769IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
SMARTSM0035511089119IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-5112144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.3E-8119144No hitNo description
PROSITE profilePS501578.663124152IPR007087Zinc finger, C2H2
SMARTSM0035590124144IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MLPNPPEPQP AEATAPAKKK RNLPGTPDPD AEVIALSPGT LMASNRFVCE VCGKGFQRDQ  60
NLQLHRRGHN LPWRLRQPGG AAPRRRRVYV CPDPGCVHHS PARALGDLTG IKKHFCRKHG  120
EKRWACPRCG KRYAVQADLK AHAKACGTRE YRCGCGTLFT RRDSFTTHRS FCGALGEETS  180
RVLAVPEQPS PRPPDLEELE QNVDKDKENG EDNVDTDQEN ENEENSGEEK NDNSTVAEVN  240
EPRHAEEEAV MEGSHCILSP PSPLPKEQQP RVEVVPDVDE AQVVVEPIVD VKQEEEDKPN  300
DDVCFQEAYQ YDCDELKDSN LPDDVVPMLP CFLPLRSDAI GTDGSSTSCG TVSSASNSIA  360
PATTTTSTFA GLFASATTST TPQSRSLRDL IGVDPTFLCL AIGASSSLFP ETSASNACTF  420
APPPAPHMSA TALLQKAAEV GASQSSSSFL KGFGLASSSS STPSREPQGR SIDSSTQSQL  480
PQGFIDNSTP FEQSPRIFID NSLPSNLPQG RFFDNTKLSS LPEGKFFDNS PPCNLPQGMS  540
ASYSPPSKLP LGQFIDNSSL PKLPQERHFD SSSLRKLPQG RYIDRLPPSM LPKGRNIGSS  600
PPCNLQQGRF FDDRAQQRHH QSNQLMDMDP EPILPRSPGL AYNSASPRLP DLMMAQSPLF  660
GPKPVTQDFL GLGIRRTMGD FATNGGLPAL MVGGELNVKS SQVPPPWEEA KRKSNGHTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-26120182365Zinc finger protein JACKDAW
5b3h_F1e-26120182365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g18370.18.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234246.20.0protein indeterminate-domain 1 isoform X1
TrEMBLA0A0Q3JRS50.0A0A0Q3JRS5_BRADI; Uncharacterized protein
STRINGBRADI1G18370.20.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.13e-88C2H2 family protein